FastQCFastQC Report
Wed 5 Jan 2022
HWN2LBGXK_n01_AA34__.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHWN2LBGXK_n01_AA34__.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3555158
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGG530521.4922543526898102No Hit
GCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGC352710.9921078050539526No Hit
GGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCCTGTCTCTTATACACAT165720.46613962023628763No Hit
GGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCCTGTCTCTTAT141840.3989696097894946No Hit
GCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCCTGTCTCTTAT128320.36094035764373905No Hit
GCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCCTGTCTCTTATACACAT107110.30128056193283115No Hit
GGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCCTGTC84540.23779533849128506No Hit
GGCTTAGGCTTAGGCTTAGGCTTAGGCCTGTCTCTTATACACATCTCCGA69700.19605317119520427No Hit
GCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCCTGTC59000.1659560559615072No Hit
GCCTAAGCCTAAGCCTAAGCCTAAGCCCTGTCTCTTATACACATCTCCGA55550.15625184590952076No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)