FastQCFastQC Report
Wed 5 Jan 2022
HWN2LBGXK_n01_AA32__.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHWN2LBGXK_n01_AA32__.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5034717
Sequences flagged as poor quality0
Sequence length76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCCTGTCTCTTATACACAT763001.5154774339848696No Hit
GGCTTAGGCTTAGGCTTAGGCTTAGGCCTGTCTCTTATACACATCTCCGA608731.2090649782301568No Hit
GGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCCTGTCTCTTAT543441.0793853954452652No Hit
GGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGG505191.003412902850349No Hit
GGCTTAGGCTTAGGCTTAGGCCTGTCTCTTATACACATCTCCGAGCCCAC311890.6194787115144704No Hit
GGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCCTGTC289890.5757821144664139No Hit
GCCTAAGCCTAAGCCTAAGCCTAAGCCCTGTCTCTTATACACATCTCCGA273620.5434664947404194No Hit
GCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCCTGTCTCTTAT231560.45992654602036226No Hit
GCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGC228850.45454391974762437No Hit
GCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCCTGTCTCTTATACACAT144350.2867092629039527No Hit
GCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCCTGTC75020.14900539593387274No Hit
GCCTAAGCCTAAGCCTAAGCCCTGTCTCTTATACACATCTCCGAGCCCAC50970.10123707052452004No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)