[2021-05-18 08:05:53,554] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml
[2021-05-18 08:05:53,554] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml
[2021-05-18 08:05:53,554] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml
[2021-05-18 08:05:53,555] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml
[2021-05-18 08:05:53,555] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}}
[2021-05-18 08:05:53,555] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HWMTKAFX2/merged
[2021-05-18 08:05:54,993] multiqc [WARNING] MultiQC Version v1.10.1 now available!
[2021-05-18 08:05:54,993] multiqc [INFO ] This is MultiQC v1.9
[2021-05-18 08:05:54,993] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HWMTKAFX2/merged
[2021-05-18 08:05:54,993] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HWMTKAFX2/merged
[2021-05-18 08:05:54,993] multiqc [INFO ] Template : default
[2021-05-18 08:05:54,993] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode]
[2021-05-18 08:05:54,993] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HWMTKAFX2/merged
[2021-05-18 08:05:54,993] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean
[2021-05-18 08:05:54,993] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-6921089/tmp57flw9fs
[2021-05-18 08:05:55,106] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWMTKAFX2_n01_ChIP-zmm16.ear-line12_fastqc.html
[2021-05-18 08:05:55,109] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWMTKAFX2_n01_ChIP-zmm16.ear-line12_fastqc.html
[2021-05-18 08:05:55,150] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: undetermined_barcodes.txt
[2021-05-18 08:05:55,152] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: undetermined_barcodes.txt
[2021-05-18 08:05:55,244] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWMTKAFX2_n01_ChIP-zmm16.tassel-line15-input2_fastqc.html
[2021-05-18 08:05:55,246] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWMTKAFX2_n01_ChIP-zmm16.tassel-line15-input2_fastqc.html
[2021-05-18 08:05:55,285] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWMTKAFX2_n01_ChIP-zmm16.tassel-line12-input2_fastqc.html
[2021-05-18 08:05:55,287] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWMTKAFX2_n01_ChIP-zmm16.tassel-line12-input2_fastqc.html
[2021-05-18 08:05:55,327] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWMTKAFX2_n01_ChIP-zmm16.tassel-line15_fastqc.html
[2021-05-18 08:05:55,329] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWMTKAFX2_n01_ChIP-zmm16.tassel-line15_fastqc.html
[2021-05-18 08:05:55,368] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWMTKAFX2_n01_ChIP-zmm16.tassel-line14-input2_fastqc.html
[2021-05-18 08:05:55,370] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWMTKAFX2_n01_ChIP-zmm16.tassel-line14-input2_fastqc.html
[2021-05-18 08:05:55,410] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWMTKAFX2_n01_ChIP-zmm16.tassel-line14_fastqc.html
[2021-05-18 08:05:55,412] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWMTKAFX2_n01_ChIP-zmm16.tassel-line14_fastqc.html
[2021-05-18 08:05:55,452] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWMTKAFX2_n01_ChIP-zmm16.tassel-line12_fastqc.html
[2021-05-18 08:05:55,454] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWMTKAFX2_n01_ChIP-zmm16.tassel-line12_fastqc.html
[2021-05-18 08:05:55,494] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWMTKAFX2_n01_ChIP-zmm16.ear-line14_fastqc.html
[2021-05-18 08:05:55,496] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWMTKAFX2_n01_ChIP-zmm16.ear-line14_fastqc.html
[2021-05-18 08:05:55,535] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWMTKAFX2_n01_ChIP-zmm16.ear-line15_fastqc.html
[2021-05-18 08:05:55,536] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWMTKAFX2_n01_ChIP-zmm16.ear-line15_fastqc.html
[2021-05-18 08:05:55,576] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWMTKAFX2_n01_undetermined_fastqc.html
[2021-05-18 08:05:55,578] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWMTKAFX2_n01_undetermined_fastqc.html
[2021-05-18 08:05:55,617] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWMTKAFX2_n01_ChIP-zmm16.ear-line15-input2_fastqc.html
[2021-05-18 08:05:55,619] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWMTKAFX2_n01_ChIP-zmm16.ear-line15-input2_fastqc.html
[2021-05-18 08:05:55,660] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWMTKAFX2_n01_ChIP-zmm16.ear-line14-input2_fastqc.html
[2021-05-18 08:05:55,662] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWMTKAFX2_n01_ChIP-zmm16.ear-line14-input2_fastqc.html
[2021-05-18 08:05:55,702] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWMTKAFX2_n01_ChIP-zmm16.ear-line12-input2_fastqc.html
[2021-05-18 08:05:55,704] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWMTKAFX2_n01_ChIP-zmm16.ear-line12-input2_fastqc.html
[2021-05-18 08:05:56,181] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2
[2021-05-18 08:05:56,182] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2
[2021-05-18 08:05:56,192] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table)
[2021-05-18 08:05:56,198] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 13 samples (table)
[2021-05-18 08:05:56,208] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table)
[2021-05-18 08:05:56,215] multiqc [DEBUG ] No samples found: conpair
[2021-05-18 08:05:56,222] multiqc [DEBUG ] No samples found: peddy
[2021-05-18 08:05:56,228] multiqc [DEBUG ] No samples found: somalier
[2021-05-18 08:05:56,233] multiqc [DEBUG ] No samples found: methylQA
[2021-05-18 08:05:56,242] multiqc [DEBUG ] No samples found: mosdepth
[2021-05-18 08:05:56,248] multiqc [DEBUG ] No samples found: phantompeakqualtools
[2021-05-18 08:05:56,252] multiqc [DEBUG ] No samples found: qualimap
[2021-05-18 08:05:56,257] multiqc [DEBUG ] No samples found: preseq
[2021-05-18 08:05:56,261] multiqc [DEBUG ] No samples found: quast
[2021-05-18 08:05:56,266] multiqc [DEBUG ] No samples found: qorts
[2021-05-18 08:05:56,278] multiqc [DEBUG ] No samples found: rna_seqc
[2021-05-18 08:05:56,284] multiqc [DEBUG ] No samples found: rockhopper
[2021-05-18 08:05:56,289] multiqc [DEBUG ] No samples found: rsem
[2021-05-18 08:05:56,302] multiqc [DEBUG ] No samples found: rseqc
[2021-05-18 08:05:56,308] multiqc [DEBUG ] No samples found: busco
[2021-05-18 08:05:56,313] multiqc [DEBUG ] No samples found: goleft_indexcov
[2021-05-18 08:05:56,317] multiqc [DEBUG ] No samples found: disambiguate
[2021-05-18 08:05:56,324] multiqc [DEBUG ] No samples found: supernova
[2021-05-18 08:05:56,338] multiqc [DEBUG ] No samples found: deeptools
[2021-05-18 08:05:56,343] multiqc [DEBUG ] No samples found: sargasso
[2021-05-18 08:05:56,349] multiqc [DEBUG ] No samples found: verifybamid
[2021-05-18 08:05:56,355] multiqc [DEBUG ] No samples found: mirtrace
[2021-05-18 08:05:56,359] multiqc [DEBUG ] No samples found: happy
[2021-05-18 08:05:56,365] multiqc [DEBUG ] No samples found: mirtop
[2021-05-18 08:05:56,373] multiqc [DEBUG ] No samples found: homer
[2021-05-18 08:05:56,378] multiqc [DEBUG ] No samples found: macs2
[2021-05-18 08:05:56,382] multiqc [DEBUG ] No samples found: theta2
[2021-05-18 08:05:56,387] multiqc [DEBUG ] No samples found: snpeff
[2021-05-18 08:05:56,397] multiqc [DEBUG ] No samples found: gatk
[2021-05-18 08:05:56,401] multiqc [DEBUG ] No samples found: htseq
[2021-05-18 08:05:56,407] multiqc [DEBUG ] No samples found: bcftools
[2021-05-18 08:05:56,411] multiqc [DEBUG ] No samples found: featureCounts
[2021-05-18 08:05:56,420] multiqc [DEBUG ] No samples found: fgbio
[2021-05-18 08:05:56,435] multiqc [DEBUG ] No samples found: dragen
[2021-05-18 08:05:56,439] multiqc [DEBUG ] No samples found: dedup
[2021-05-18 08:05:56,444] multiqc [DEBUG ] No samples found: damageprofiler
[2021-05-18 08:05:56,470] multiqc [DEBUG ] No samples found: biobambam2
[2021-05-18 08:05:56,476] multiqc [DEBUG ] No samples found: mtnucratio
[2021-05-18 08:05:56,478] multiqc [DEBUG ] No samples found: picard
[2021-05-18 08:05:56,483] multiqc [DEBUG ] No samples found: prokka
[2021-05-18 08:05:56,487] multiqc [DEBUG ] No samples found: samblaster
[2021-05-18 08:05:56,496] multiqc [DEBUG ] No samples found: samtools
[2021-05-18 08:05:56,501] multiqc [DEBUG ] No samples found: sexdeterrmine
[2021-05-18 08:05:56,506] multiqc [DEBUG ] No samples found: bamtools
[2021-05-18 08:05:56,510] multiqc [DEBUG ] No samples found: jellyfish
[2021-05-18 08:05:56,518] multiqc [DEBUG ] No samples found: vcftools
[2021-05-18 08:05:56,523] multiqc [DEBUG ] No samples found: longranger
[2021-05-18 08:05:56,529] multiqc [DEBUG ] No samples found: stacks
[2021-05-18 08:05:56,534] multiqc [DEBUG ] No samples found: varscan2
[2021-05-18 08:05:56,558] multiqc [DEBUG ] No samples found: bbmap
[2021-05-18 08:05:56,563] multiqc [DEBUG ] No samples found: bismark
[2021-05-18 08:05:56,569] multiqc [DEBUG ] No samples found: biscuit
[2021-05-18 08:05:56,573] multiqc [DEBUG ] No samples found: hicexplorer
[2021-05-18 08:05:56,579] multiqc [DEBUG ] No samples found: hicup
[2021-05-18 08:05:56,585] multiqc [DEBUG ] No samples found: hicpro
[2021-05-18 08:05:56,589] multiqc [DEBUG ] No samples found: salmon
[2021-05-18 08:05:56,595] multiqc [DEBUG ] No samples found: kallisto
[2021-05-18 08:05:56,601] multiqc [DEBUG ] No samples found: slamdunk
[2021-05-18 08:05:56,606] multiqc [DEBUG ] No samples found: star
[2021-05-18 08:05:56,611] multiqc [DEBUG ] No samples found: hisat2
[2021-05-18 08:05:56,616] multiqc [DEBUG ] No samples found: tophat
[2021-05-18 08:05:56,621] multiqc [DEBUG ] No samples found: bowtie2
[2021-05-18 08:05:56,626] multiqc [DEBUG ] No samples found: bowtie1
[2021-05-18 08:05:56,632] multiqc [DEBUG ] No samples found: snpsplit
[2021-05-18 08:05:56,638] multiqc [DEBUG ] No samples found: kat
[2021-05-18 08:05:56,643] multiqc [DEBUG ] No samples found: leehom
[2021-05-18 08:05:56,648] multiqc [DEBUG ] No samples found: adapterRemoval
[2021-05-18 08:05:56,654] multiqc [DEBUG ] No samples found: clipandmerge
[2021-05-18 08:05:56,659] multiqc [DEBUG ] No samples found: cutadapt
[2021-05-18 08:05:56,664] multiqc [DEBUG ] No samples found: flexbar
[2021-05-18 08:05:56,669] multiqc [DEBUG ] No samples found: kaiju
[2021-05-18 08:05:56,674] multiqc [DEBUG ] No samples found: kraken
[2021-05-18 08:05:56,678] multiqc [DEBUG ] No samples found: malt
[2021-05-18 08:05:56,682] multiqc [DEBUG ] No samples found: trimmomatic
[2021-05-18 08:05:56,687] multiqc [DEBUG ] No samples found: sickle
[2021-05-18 08:05:56,692] multiqc [DEBUG ] No samples found: skewer
[2021-05-18 08:05:56,697] multiqc [DEBUG ] No samples found: sortmerna
[2021-05-18 08:05:56,701] multiqc [DEBUG ] No samples found: biobloomtools
[2021-05-18 08:05:56,705] multiqc [DEBUG ] No samples found: fastq_screen
[2021-05-18 08:05:56,711] multiqc [DEBUG ] No samples found: afterqc
[2021-05-18 08:05:56,716] multiqc [DEBUG ] No samples found: fastp
[2021-05-18 08:05:57,030] multiqc.modules.fastqc.fastqc [INFO ] Found 13 reports
[2021-05-18 08:05:57,178] multiqc [DEBUG ] No samples found: pycoqc
[2021-05-18 08:05:57,183] multiqc [DEBUG ] No samples found: minionqc
[2021-05-18 08:05:57,189] multiqc [DEBUG ] No samples found: multivcfanalyzer
[2021-05-18 08:05:57,195] multiqc [DEBUG ] No samples found: clusterflow
[2021-05-18 08:05:57,200] multiqc [DEBUG ] No samples found: bcl2fastq
[2021-05-18 08:05:57,205] multiqc [DEBUG ] No samples found: interop
[2021-05-18 08:05:57,210] multiqc [DEBUG ] No samples found: ivar
[2021-05-18 08:05:57,214] multiqc [DEBUG ] No samples found: flash
[2021-05-18 08:05:57,220] multiqc [DEBUG ] No samples found: seqyclean
[2021-05-18 08:05:57,220] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'.
[2021-05-18 08:05:57,220] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'.
[2021-05-18 08:05:57,220] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'.
[2021-05-18 08:05:57,220] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'.
[2021-05-18 08:05:57,236] multiqc [INFO ] Compressing plot data
[2021-05-18 08:05:57,463] multiqc [INFO ] Report : multiqc_report.html
[2021-05-18 08:05:57,463] multiqc [INFO ] Data : multiqc_data
[2021-05-18 08:05:57,463] multiqc [DEBUG ] Moving data file from '/state/partition1/job-6921089/tmp57flw9fs/multiqc_data' to '/scratch/gencore/logs/html/HWMTKAFX2/merged/multiqc_data'
[2021-05-18 08:05:57,590] multiqc [INFO ] MultiQC complete