[2023-11-08 04:33:07,368] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2023-11-08 04:33:07,368] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2023-11-08 04:33:07,368] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-11-08 04:33:07,371] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2023-11-08 04:33:07,371] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2023-11-08 04:33:07,371] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HWL5VBGXT/merged [2023-11-08 04:33:08,455] multiqc [WARNING] MultiQC Version v1.17 now available! [2023-11-08 04:33:08,455] multiqc [INFO ] This is MultiQC v1.9 [2023-11-08 04:33:08,455] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HWL5VBGXT/merged [2023-11-08 04:33:08,455] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HWL5VBGXT/merged [2023-11-08 04:33:08,455] multiqc [INFO ] Template : default [2023-11-08 04:33:08,455] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2023-11-08 04:33:08,455] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HWL5VBGXT/merged [2023-11-08 04:33:08,456] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2023-11-08 04:33:08,456] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-39764132/tmpk9m3jnjn [2023-11-08 04:33:08,572] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_CviAmpPoolHm-input_af8_fastqc.html [2023-11-08 04:33:08,575] multiqc [DEBUG ] File ignored by longranger/invocation 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HWL5VBGXT_n01_daplib_C24AmpPoolHm-input_af4_fastqc.html [2023-11-08 04:33:13,491] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_AtbZIP24_ampCol-B_af2_fastqc.html [2023-11-08 04:33:13,493] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_AtbZIP24_ampCol-B_af2_fastqc.html [2023-11-08 04:33:13,536] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_C24AmpPoolHm-input_af6_fastqc.html [2023-11-08 04:33:13,538] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_C24AmpPoolHm-input_af6_fastqc.html [2023-11-08 04:33:13,582] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_AtbZIP63_ampCol-B_af1_fastqc.html [2023-11-08 04:33:13,584] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_AtbZIP63_ampCol-B_af1_fastqc.html [2023-11-08 04:33:13,630] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_FaWRKY25_ampCol-B_af1_fastqc.html [2023-11-08 04:33:13,632] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_FaWRKY25_ampCol-B_af1_fastqc.html [2023-11-08 04:33:13,676] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_C24AmpPoolHm-input_af2_fastqc.html [2023-11-08 04:33:13,678] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_C24AmpPoolHm-input_af2_fastqc.html [2023-11-08 04:33:13,723] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_C24AmpPoolHm-input_af5_fastqc.html [2023-11-08 04:33:13,724] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_C24AmpPoolHm-input_af5_fastqc.html [2023-11-08 04:33:13,768] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_AtbZIP48_ampCol-B_af1wg_fastqc.html [2023-11-08 04:33:13,770] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_AtbZIP48_ampCol-B_af1wg_fastqc.html [2023-11-08 04:33:13,818] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_AtbZIP9_ampCol-B_af2_fastqc.html [2023-11-08 04:33:13,820] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_AtbZIP9_ampCol-B_af2_fastqc.html [2023-11-08 04:33:13,864] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_AtbZIP41_ampCol-B_af_fastqc.html [2023-11-08 04:33:13,866] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_AtbZIP41_ampCol-B_af_fastqc.html [2023-11-08 04:33:13,912] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_ColAmpPoolHm-input_af2_fastqc.html [2023-11-08 04:33:13,914] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_ColAmpPoolHm-input_af2_fastqc.html [2023-11-08 04:33:13,958] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_An1AmpPoolHm-input_af3_fastqc.html [2023-11-08 04:33:13,960] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_An1AmpPoolHm-input_af3_fastqc.html [2023-11-08 04:33:14,004] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_AtbZIP39_ampCol-B_af1wg_fastqc.html [2023-11-08 04:33:14,006] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_AtbZIP39_ampCol-B_af1wg_fastqc.html [2023-11-08 04:33:14,052] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_KyoAmpPoolHm-input_af8_fastqc.html [2023-11-08 04:33:14,054] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_KyoAmpPoolHm-input_af8_fastqc.html [2023-11-08 04:33:14,099] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_AtbZIP66_ampCol-B_af2_fastqc.html [2023-11-08 04:33:14,101] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_AtbZIP66_ampCol-B_af2_fastqc.html [2023-11-08 04:33:14,147] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_EriAmpPoolHm-input_af6_fastqc.html [2023-11-08 04:33:14,149] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_EriAmpPoolHm-input_af6_fastqc.html [2023-11-08 04:33:14,194] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_AtbZIP33_ampCol-B_af1_fastqc.html [2023-11-08 04:33:14,196] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_AtbZIP33_ampCol-B_af1_fastqc.html [2023-11-08 04:33:14,239] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_AtbZIP33_ampCol-B_af2_fastqc.html [2023-11-08 04:33:14,241] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_AtbZIP33_ampCol-B_af2_fastqc.html [2023-11-08 04:33:14,285] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_C24AmpPoolHm-input_af3_fastqc.html [2023-11-08 04:33:14,287] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_C24AmpPoolHm-input_af3_fastqc.html [2023-11-08 04:33:14,331] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_AtbZIP48_ampCol-B_af2wg_fastqc.html [2023-11-08 04:33:14,333] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_AtbZIP48_ampCol-B_af2wg_fastqc.html [2023-11-08 04:33:14,379] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_An1AmpPoolHm-input_af5_fastqc.html [2023-11-08 04:33:14,381] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_An1AmpPoolHm-input_af5_fastqc.html [2023-11-08 04:33:14,426] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_An1AmpPoolHm-input_af8_fastqc.html [2023-11-08 04:33:14,428] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_An1AmpPoolHm-input_af8_fastqc.html [2023-11-08 04:33:14,472] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_ShaAmpPoolHm-input_af7_fastqc.html [2023-11-08 04:33:14,474] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_ShaAmpPoolHm-input_af7_fastqc.html [2023-11-08 04:33:14,518] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_AtbZIP13_ampCol-B_af1_fastqc.html [2023-11-08 04:33:14,520] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_AtbZIP13_ampCol-B_af1_fastqc.html [2023-11-08 04:33:14,564] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_KyoAmpPoolHm-input_af3_fastqc.html [2023-11-08 04:33:14,566] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_KyoAmpPoolHm-input_af3_fastqc.html [2023-11-08 04:33:14,610] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_TGA5_ampFa-B_af_fastqc.html [2023-11-08 04:33:14,612] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_TGA5_ampFa-B_af_fastqc.html [2023-11-08 04:33:14,656] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_ShaAmpPoolHm-input_af4_fastqc.html [2023-11-08 04:33:14,658] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_ShaAmpPoolHm-input_af4_fastqc.html [2023-11-08 04:33:14,702] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_AtbZIP74N_ampCol-B_af1_fastqc.html [2023-11-08 04:33:14,704] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_AtbZIP74N_ampCol-B_af1_fastqc.html [2023-11-08 04:33:14,749] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_ColAmpPoolHm-input_af8_fastqc.html [2023-11-08 04:33:14,751] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_ColAmpPoolHm-input_af8_fastqc.html [2023-11-08 04:33:14,796] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_AtbZIP47_ampCol-B_af1wg_fastqc.html [2023-11-08 04:33:14,798] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_AtbZIP47_ampCol-B_af1wg_fastqc.html [2023-11-08 04:33:14,844] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_ColAmpPoolHm-input_af5_fastqc.html [2023-11-08 04:33:14,846] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_ColAmpPoolHm-input_af5_fastqc.html [2023-11-08 04:33:14,889] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_CviAmpPoolHm-input_af7_fastqc.html [2023-11-08 04:33:14,891] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL5VBGXT_n01_daplib_CviAmpPoolHm-input_af7_fastqc.html [2023-11-08 04:33:15,479] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2023-11-08 04:33:15,481] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2023-11-08 04:33:15,498] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2023-11-08 04:33:15,500] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2023-11-08 04:33:15,562] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 137 samples (table) [2023-11-08 04:33:15,567] multiqc [DEBUG ] No samples found: conpair [2023-11-08 04:33:15,573] multiqc [DEBUG ] No samples found: peddy [2023-11-08 04:33:15,579] multiqc [DEBUG ] No samples found: somalier [2023-11-08 04:33:15,588] multiqc [DEBUG ] No samples found: methylQA [2023-11-08 04:33:15,598] multiqc [DEBUG ] No samples found: mosdepth [2023-11-08 04:33:15,603] multiqc [DEBUG ] No samples found: phantompeakqualtools [2023-11-08 04:33:15,606] multiqc [DEBUG ] No samples found: qualimap [2023-11-08 04:33:15,612] multiqc [DEBUG ] No samples found: preseq [2023-11-08 04:33:15,618] multiqc [DEBUG ] No samples found: quast [2023-11-08 04:33:15,624] multiqc [DEBUG ] No samples found: qorts [2023-11-08 04:33:15,629] multiqc [DEBUG ] No samples found: rna_seqc [2023-11-08 04:33:15,635] multiqc [DEBUG ] No samples found: rockhopper [2023-11-08 04:33:15,640] multiqc [DEBUG ] No samples found: rsem [2023-11-08 04:33:15,652] multiqc [DEBUG ] No samples found: rseqc [2023-11-08 04:33:15,657] multiqc [DEBUG ] No samples found: busco [2023-11-08 04:33:15,663] multiqc [DEBUG ] No samples found: goleft_indexcov [2023-11-08 04:33:15,667] multiqc [DEBUG ] No samples found: disambiguate [2023-11-08 04:33:15,673] multiqc [DEBUG ] No samples found: supernova [2023-11-08 04:33:15,687] multiqc [DEBUG ] No samples found: deeptools [2023-11-08 04:33:15,692] multiqc [DEBUG ] No samples found: sargasso [2023-11-08 04:33:15,698] multiqc [DEBUG ] No samples found: verifybamid [2023-11-08 04:33:15,703] multiqc [DEBUG ] No samples found: mirtrace [2023-11-08 04:33:15,708] multiqc [DEBUG ] No samples found: happy [2023-11-08 04:33:15,714] multiqc [DEBUG ] No samples found: mirtop [2023-11-08 04:33:15,721] multiqc [DEBUG ] No samples found: homer [2023-11-08 04:33:15,727] multiqc [DEBUG ] No samples found: macs2 [2023-11-08 04:33:15,732] multiqc [DEBUG ] No samples found: theta2 [2023-11-08 04:33:15,737] multiqc [DEBUG ] No samples found: snpeff [2023-11-08 04:33:15,745] multiqc [DEBUG ] No samples found: gatk [2023-11-08 04:33:15,750] multiqc [DEBUG ] No samples found: htseq [2023-11-08 04:33:15,760] multiqc [DEBUG ] No samples found: bcftools [2023-11-08 04:33:15,766] multiqc [DEBUG ] No samples found: featureCounts [2023-11-08 04:33:15,773] multiqc [DEBUG ] No samples found: fgbio [2023-11-08 04:33:15,787] multiqc [DEBUG ] No samples found: dragen [2023-11-08 04:33:15,793] multiqc [DEBUG ] No samples found: dedup [2023-11-08 04:33:15,799] multiqc [DEBUG ] No samples found: damageprofiler [2023-11-08 04:33:15,823] multiqc [DEBUG ] No samples found: biobambam2 [2023-11-08 04:33:15,828] multiqc [DEBUG ] No samples found: mtnucratio [2023-11-08 04:33:15,831] multiqc [DEBUG ] No samples found: picard [2023-11-08 04:33:15,836] multiqc [DEBUG ] No samples found: prokka [2023-11-08 04:33:15,841] multiqc [DEBUG ] No samples found: samblaster [2023-11-08 04:33:15,850] multiqc [DEBUG ] No samples found: samtools [2023-11-08 04:33:15,856] multiqc [DEBUG ] No samples found: sexdeterrmine [2023-11-08 04:33:15,862] multiqc [DEBUG ] No samples found: bamtools [2023-11-08 04:33:15,866] multiqc [DEBUG ] No samples found: jellyfish [2023-11-08 04:33:15,874] multiqc [DEBUG ] No samples found: vcftools [2023-11-08 04:33:15,879] multiqc [DEBUG ] No samples found: longranger [2023-11-08 04:33:15,885] multiqc [DEBUG ] No samples found: stacks [2023-11-08 04:33:15,891] multiqc [DEBUG ] No samples found: varscan2 [2023-11-08 04:33:15,905] multiqc [DEBUG ] No samples found: bbmap [2023-11-08 04:33:15,911] multiqc [DEBUG ] No samples found: bismark [2023-11-08 04:33:15,917] multiqc [DEBUG ] No samples found: biscuit [2023-11-08 04:33:15,923] multiqc [DEBUG ] No samples found: hicexplorer [2023-11-08 04:33:15,929] multiqc [DEBUG ] No samples found: hicup [2023-11-08 04:33:15,934] multiqc [DEBUG ] No samples found: hicpro [2023-11-08 04:33:15,939] multiqc [DEBUG ] No samples found: salmon [2023-11-08 04:33:15,945] multiqc [DEBUG ] No samples found: kallisto [2023-11-08 04:33:15,950] multiqc [DEBUG ] No samples found: slamdunk [2023-11-08 04:33:15,955] multiqc [DEBUG ] No samples found: star [2023-11-08 04:33:15,960] multiqc [DEBUG ] No samples found: hisat2 [2023-11-08 04:33:15,965] multiqc [DEBUG ] No samples found: tophat [2023-11-08 04:33:15,971] multiqc [DEBUG ] No samples found: bowtie2 [2023-11-08 04:33:15,976] multiqc [DEBUG ] No samples found: bowtie1 [2023-11-08 04:33:15,982] multiqc [DEBUG ] No samples found: snpsplit [2023-11-08 04:33:15,987] multiqc [DEBUG ] No samples found: kat [2023-11-08 04:33:15,991] multiqc [DEBUG ] No samples found: leehom [2023-11-08 04:33:15,996] multiqc [DEBUG ] No samples found: adapterRemoval [2023-11-08 04:33:16,002] multiqc [DEBUG ] No samples found: clipandmerge [2023-11-08 04:33:16,007] multiqc [DEBUG ] No samples found: cutadapt [2023-11-08 04:33:16,012] multiqc [DEBUG ] No samples found: flexbar [2023-11-08 04:33:16,018] multiqc [DEBUG ] No samples found: kaiju [2023-11-08 04:33:16,023] multiqc [DEBUG ] No samples found: kraken [2023-11-08 04:33:16,028] multiqc [DEBUG ] No samples found: malt [2023-11-08 04:33:16,034] multiqc [DEBUG ] No samples found: trimmomatic [2023-11-08 04:33:16,038] multiqc [DEBUG ] No samples found: sickle [2023-11-08 04:33:16,044] multiqc [DEBUG ] No samples found: skewer [2023-11-08 04:33:16,049] multiqc [DEBUG ] No samples found: sortmerna [2023-11-08 04:33:16,054] multiqc [DEBUG ] No samples found: biobloomtools [2023-11-08 04:33:16,059] multiqc [DEBUG ] No samples found: fastq_screen [2023-11-08 04:33:16,065] multiqc [DEBUG ] No samples found: afterqc [2023-11-08 04:33:16,070] multiqc [DEBUG ] No samples found: fastp [2023-11-08 04:33:25,629] multiqc.modules.fastqc.fastqc [INFO ] Found 137 reports [2023-11-08 04:33:54,009] multiqc [DEBUG ] No samples found: pycoqc [2023-11-08 04:33:54,014] multiqc [DEBUG ] No samples found: minionqc [2023-11-08 04:33:54,020] multiqc [DEBUG ] No samples found: multivcfanalyzer [2023-11-08 04:33:54,029] multiqc [DEBUG ] No samples found: clusterflow [2023-11-08 04:33:54,035] multiqc [DEBUG ] No samples found: bcl2fastq [2023-11-08 04:33:54,041] multiqc [DEBUG ] No samples found: interop [2023-11-08 04:33:54,048] multiqc [DEBUG ] No samples found: ivar [2023-11-08 04:33:54,054] multiqc [DEBUG ] No samples found: flash [2023-11-08 04:33:54,060] multiqc [DEBUG ] No samples found: seqyclean [2023-11-08 04:33:54,060] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2023-11-08 04:33:54,060] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2023-11-08 04:33:54,060] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2023-11-08 04:33:54,060] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2023-11-08 04:33:54,060] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2023-11-08 04:33:54,060] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2023-11-08 04:33:54,060] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2023-11-08 04:33:54,060] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2023-11-08 04:33:54,060] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2023-11-08 04:33:54,060] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-11-08 04:33:54,060] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2023-11-08 04:33:54,060] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2023-11-08 04:33:54,060] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2023-11-08 04:33:54,060] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2023-11-08 04:33:54,060] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-11-08 04:33:54,060] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2023-11-08 04:33:54,061] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2023-11-08 04:33:54,061] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2023-11-08 04:33:54,061] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2023-11-08 04:33:54,061] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2023-11-08 04:33:54,061] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2023-11-08 04:33:54,061] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2023-11-08 04:33:54,061] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2023-11-08 04:33:54,061] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2023-11-08 04:33:54,061] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2023-11-08 04:33:54,061] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2023-11-08 04:33:54,061] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2023-11-08 04:33:54,061] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2023-11-08 04:33:54,061] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2023-11-08 04:33:54,061] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2023-11-08 04:33:54,219] multiqc [INFO ] Compressing plot data [2023-11-08 04:33:54,273] multiqc [INFO ] Report : multiqc_report.html [2023-11-08 04:33:54,274] multiqc [INFO ] Data : multiqc_data [2023-11-08 04:33:54,274] multiqc [DEBUG ] Moving data file from '/state/partition1/job-39764132/tmpk9m3jnjn/multiqc_data' to '/scratch/gencore/logs/html/HWL5VBGXT/merged/multiqc_data' [2023-11-08 04:33:54,435] multiqc [INFO ] MultiQC complete