FastQCFastQC Report
Wed 8 Nov 2023
HWL5VBGXT_n01_AtbZIP39_ampCol-B_af1wg.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHWL5VBGXT_n01_AtbZIP39_ampCol-B_af1wg.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4516513
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCGGGGTTGGC68100.1507800376086596TruSeq Adapter, Index 3 (96% over 33bp)
CGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGTATGCC65900.14590902317783652TruSeq Adapter, Index 3 (96% over 33bp)
CGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCGGGGGTGGC49410.10939855592134906TruSeq Adapter, Index 3 (96% over 33bp)
CGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCGCGTATGCC47220.10454968246521154TruSeq Adapter, Index 3 (96% over 33bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)