[2024-06-21 08:29:47,067] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2024-06-21 08:29:47,067] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2024-06-21 08:29:47,067] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-06-21 08:29:47,070] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml [2024-06-21 08:29:47,070] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2024-06-21 08:29:47,070] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-06-21 08:29:47,117] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2024-06-21 08:29:47,118] multiqc [INFO ] This is MultiQC v1.9 [2024-06-21 08:29:47,118] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-06-21 08:29:47,118] multiqc [DEBUG ] Working dir : /vast/gencore/GENEFLOW/work/69/fd6f5da45426bbe84ad353596a73d1/merged [2024-06-21 08:29:47,118] multiqc [INFO ] Template : default [2024-06-21 08:29:47,118] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2024-06-21 08:29:47,118] multiqc [INFO ] Searching : /vast/gencore/GENEFLOW/work/69/fd6f5da45426bbe84ad353596a73d1/merged [2024-06-21 08:29:47,118] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2024-06-21 08:29:47,118] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-47760481/tmpzyq6gy5f [2024-06-21 08:29:47,229] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL3KAFX5_n01_BARSEQ_0H_1_fastqc.html [2024-06-21 08:29:47,236] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL3KAFX5_n01_BARSEQ_0H_1_fastqc.html [2024-06-21 08:29:47,339] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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08:29:49,936] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_48H_I_0.28_1_fastqc.html [2024-06-21 08:29:49,936] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_48H_I_0.28_1_fastqc.html [2024-06-21 08:29:49,936] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_48H_I_0.28_1_fastqc.html [2024-06-21 08:29:49,936] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_48H_I_0.28_1_fastqc.html [2024-06-21 08:29:49,936] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_48H_I_0.28_1_fastqc.html [2024-06-21 08:29:50,039] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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rseqc/infer_experiment because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_48H_I_0.28_2_fastqc.html [2024-06-21 08:29:50,146] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_48H_I_fastqc.html [2024-06-21 08:29:50,152] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_48H_I_fastqc.html [2024-06-21 08:29:50,153] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_48H_I_fastqc.html [2024-06-21 08:29:50,153] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_48H_I_fastqc.html [2024-06-21 08:29:50,153] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_48H_I_fastqc.html [2024-06-21 08:29:50,153] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_48H_I_fastqc.html [2024-06-21 08:29:50,153] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_48H_I_fastqc.html [2024-06-21 08:29:50,258] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_48H_UI_1_fastqc.html [2024-06-21 08:29:50,267] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_48H_UI_1_fastqc.html [2024-06-21 08:29:50,268] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_48H_UI_1_fastqc.html [2024-06-21 08:29:50,268] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_48H_UI_1_fastqc.html [2024-06-21 08:29:50,268] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_48H_UI_1_fastqc.html [2024-06-21 08:29:50,268] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_48H_UI_1_fastqc.html [2024-06-21 08:29:50,268] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_48H_UI_1_fastqc.html [2024-06-21 08:29:50,373] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_48H_UI_2_fastqc.html [2024-06-21 08:29:50,379] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_48H_UI_2_fastqc.html [2024-06-21 08:29:50,379] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_48H_UI_2_fastqc.html [2024-06-21 08:29:50,379] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_48H_UI_2_fastqc.html [2024-06-21 08:29:50,379] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_48H_UI_2_fastqc.html [2024-06-21 08:29:50,379] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_48H_UI_2_fastqc.html [2024-06-21 08:29:50,379] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_48H_UI_2_fastqc.html [2024-06-21 08:29:50,483] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_I_0.28_1_fastqc.html [2024-06-21 08:29:50,490] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_I_0.28_1_fastqc.html [2024-06-21 08:29:50,490] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_I_0.28_1_fastqc.html [2024-06-21 08:29:50,490] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_I_0.28_1_fastqc.html [2024-06-21 08:29:50,490] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_I_0.28_1_fastqc.html [2024-06-21 08:29:50,490] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_I_0.28_1_fastqc.html [2024-06-21 08:29:50,490] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_I_0.28_1_fastqc.html [2024-06-21 08:29:50,596] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_I_0.28_2_fastqc.html [2024-06-21 08:29:50,602] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_I_0.28_2_fastqc.html [2024-06-21 08:29:50,603] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_I_0.28_2_fastqc.html [2024-06-21 08:29:50,603] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_I_0.28_2_fastqc.html [2024-06-21 08:29:50,603] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_I_0.28_2_fastqc.html [2024-06-21 08:29:50,603] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_I_0.28_2_fastqc.html [2024-06-21 08:29:50,603] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_I_0.28_2_fastqc.html [2024-06-21 08:29:50,711] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_I_1_fastqc.html [2024-06-21 08:29:50,718] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_I_1_fastqc.html [2024-06-21 08:29:50,718] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_I_1_fastqc.html [2024-06-21 08:29:50,718] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_I_1_fastqc.html [2024-06-21 08:29:50,718] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_I_1_fastqc.html [2024-06-21 08:29:50,718] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_I_1_fastqc.html [2024-06-21 08:29:50,718] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_I_1_fastqc.html [2024-06-21 08:29:50,833] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_I_2_fastqc.html [2024-06-21 08:29:50,840] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_I_2_fastqc.html [2024-06-21 08:29:50,840] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_I_2_fastqc.html [2024-06-21 08:29:50,840] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_I_2_fastqc.html [2024-06-21 08:29:50,840] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_I_2_fastqc.html [2024-06-21 08:29:50,841] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_I_2_fastqc.html [2024-06-21 08:29:50,841] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_I_2_fastqc.html [2024-06-21 08:29:50,950] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_UI_fastqc.html [2024-06-21 08:29:50,957] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_UI_fastqc.html [2024-06-21 08:29:50,957] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_UI_fastqc.html [2024-06-21 08:29:50,957] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_UI_fastqc.html [2024-06-21 08:29:50,957] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_UI_fastqc.html [2024-06-21 08:29:50,958] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_UI_fastqc.html [2024-06-21 08:29:50,958] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HWL3KAFX5_n02_BARSEQ_72H_UI_fastqc.html [2024-06-21 08:29:51,059] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWL3KAFX5_n02_undetermined_fastqc.html [2024-06-21 08:29:51,064] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWL3KAFX5_n02_undetermined_fastqc.html [2024-06-21 08:29:51,406] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2024-06-21 08:29:51,407] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2024-06-21 08:29:51,423] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 19 samples (table) [2024-06-21 08:29:51,425] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2024-06-21 08:29:51,435] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2024-06-21 08:29:51,438] multiqc [DEBUG ] No samples found: conpair [2024-06-21 08:29:51,441] multiqc [DEBUG ] No samples found: peddy [2024-06-21 08:29:51,444] multiqc [DEBUG ] No samples found: somalier [2024-06-21 08:29:51,446] multiqc [DEBUG ] No samples found: methylQA [2024-06-21 08:29:51,450] multiqc [DEBUG ] No samples found: mosdepth [2024-06-21 08:29:51,453] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-06-21 08:29:51,456] multiqc [DEBUG ] No samples found: qualimap [2024-06-21 08:29:51,459] multiqc [DEBUG ] No samples found: preseq [2024-06-21 08:29:51,462] multiqc [DEBUG ] No samples found: quast [2024-06-21 08:29:51,465] multiqc [DEBUG ] No samples found: qorts [2024-06-21 08:29:51,468] multiqc [DEBUG ] No samples found: rna_seqc [2024-06-21 08:29:51,470] multiqc [DEBUG ] No samples found: rockhopper [2024-06-21 08:29:51,473] multiqc [DEBUG ] No samples found: rsem [2024-06-21 08:29:51,478] multiqc [DEBUG ] No samples found: rseqc [2024-06-21 08:29:51,481] multiqc [DEBUG ] No samples found: busco [2024-06-21 08:29:51,483] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-06-21 08:29:51,486] multiqc [DEBUG ] No samples found: disambiguate [2024-06-21 08:29:51,489] multiqc [DEBUG ] No samples found: supernova [2024-06-21 08:29:51,494] multiqc [DEBUG ] No samples found: deeptools [2024-06-21 08:29:51,497] multiqc [DEBUG ] No samples found: sargasso [2024-06-21 08:29:51,500] multiqc [DEBUG ] No samples found: verifybamid [2024-06-21 08:29:51,503] multiqc [DEBUG ] No samples found: mirtrace [2024-06-21 08:29:51,505] multiqc [DEBUG ] No samples found: happy [2024-06-21 08:29:51,508] multiqc [DEBUG ] No samples found: mirtop [2024-06-21 08:29:51,512] multiqc [DEBUG ] No samples found: homer [2024-06-21 08:29:51,514] multiqc [DEBUG ] No samples found: macs2 [2024-06-21 08:29:51,517] multiqc [DEBUG ] No samples found: theta2 [2024-06-21 08:29:51,520] multiqc [DEBUG ] No samples found: snpeff [2024-06-21 08:29:51,523] multiqc [DEBUG ] No samples found: gatk [2024-06-21 08:29:51,526] multiqc [DEBUG ] No samples found: htseq [2024-06-21 08:29:51,529] multiqc [DEBUG ] No samples found: bcftools [2024-06-21 08:29:51,532] multiqc [DEBUG ] No samples found: featureCounts [2024-06-21 08:29:51,535] multiqc [DEBUG ] No samples found: fgbio [2024-06-21 08:29:51,540] multiqc [DEBUG ] No samples found: dragen [2024-06-21 08:29:51,543] multiqc [DEBUG ] No samples found: dedup [2024-06-21 08:29:51,546] multiqc [DEBUG ] No samples found: damageprofiler [2024-06-21 08:29:51,554] multiqc [DEBUG ] No samples found: biobambam2 [2024-06-21 08:29:51,556] multiqc [DEBUG ] No samples found: mtnucratio [2024-06-21 08:29:51,559] multiqc [DEBUG ] No samples found: picard [2024-06-21 08:29:51,561] multiqc [DEBUG ] No samples found: prokka [2024-06-21 08:29:51,564] multiqc [DEBUG ] No samples found: samblaster [2024-06-21 08:29:51,568] multiqc [DEBUG ] No samples found: samtools [2024-06-21 08:29:51,571] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-06-21 08:29:51,574] multiqc [DEBUG ] No samples found: bamtools [2024-06-21 08:29:51,576] multiqc [DEBUG ] No samples found: jellyfish [2024-06-21 08:29:51,580] multiqc [DEBUG ] No samples found: vcftools [2024-06-21 08:29:51,583] multiqc [DEBUG ] No samples found: longranger [2024-06-21 08:29:51,586] multiqc [DEBUG ] No samples found: stacks [2024-06-21 08:29:51,589] multiqc [DEBUG ] No samples found: varscan2 [2024-06-21 08:29:51,594] multiqc [DEBUG ] No samples found: bbmap [2024-06-21 08:29:51,597] multiqc [DEBUG ] No samples found: bismark [2024-06-21 08:29:51,600] multiqc [DEBUG ] No samples found: biscuit [2024-06-21 08:29:51,603] multiqc [DEBUG ] No samples found: hicexplorer [2024-06-21 08:29:51,606] multiqc [DEBUG ] No samples found: hicup [2024-06-21 08:29:51,608] multiqc [DEBUG ] No samples found: hicpro [2024-06-21 08:29:51,611] multiqc [DEBUG ] No samples found: salmon [2024-06-21 08:29:51,614] multiqc [DEBUG ] No samples found: kallisto [2024-06-21 08:29:51,617] multiqc [DEBUG ] No samples found: slamdunk [2024-06-21 08:29:51,620] multiqc [DEBUG ] No samples found: star [2024-06-21 08:29:51,622] multiqc [DEBUG ] No samples found: hisat2 [2024-06-21 08:29:51,625] multiqc [DEBUG ] No samples found: tophat [2024-06-21 08:29:51,628] multiqc [DEBUG ] No samples found: bowtie2 [2024-06-21 08:29:51,631] multiqc [DEBUG ] No samples found: bowtie1 [2024-06-21 08:29:51,634] multiqc [DEBUG ] No samples found: snpsplit [2024-06-21 08:29:51,636] multiqc [DEBUG ] No samples found: kat [2024-06-21 08:29:51,639] multiqc [DEBUG ] No samples found: leehom [2024-06-21 08:29:51,642] multiqc [DEBUG ] No samples found: adapterRemoval [2024-06-21 08:29:51,645] multiqc [DEBUG ] No samples found: clipandmerge [2024-06-21 08:29:51,648] multiqc [DEBUG ] No samples found: cutadapt [2024-06-21 08:29:51,650] multiqc [DEBUG ] No samples found: flexbar [2024-06-21 08:29:51,653] multiqc [DEBUG ] No samples found: kaiju [2024-06-21 08:29:51,656] multiqc [DEBUG ] No samples found: kraken [2024-06-21 08:29:51,659] multiqc [DEBUG ] No samples found: malt [2024-06-21 08:29:51,662] multiqc [DEBUG ] No samples found: trimmomatic [2024-06-21 08:29:51,664] multiqc [DEBUG ] No samples found: sickle [2024-06-21 08:29:51,667] multiqc [DEBUG ] No samples found: skewer [2024-06-21 08:29:51,670] multiqc [DEBUG ] No samples found: sortmerna [2024-06-21 08:29:51,673] multiqc [DEBUG ] No samples found: biobloomtools [2024-06-21 08:29:51,675] multiqc [DEBUG ] No samples found: fastq_screen [2024-06-21 08:29:51,678] multiqc [DEBUG ] No samples found: afterqc [2024-06-21 08:29:51,681] multiqc [DEBUG ] No samples found: fastp [2024-06-21 08:29:52,917] multiqc.modules.fastqc.fastqc [INFO ] Found 38 reports [2024-06-21 08:29:53,712] multiqc [DEBUG ] No samples found: pycoqc [2024-06-21 08:29:53,716] multiqc [DEBUG ] No samples found: minionqc [2024-06-21 08:29:53,718] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-06-21 08:29:53,721] multiqc [DEBUG ] No samples found: clusterflow [2024-06-21 08:29:53,724] multiqc [DEBUG ] No samples found: bcl2fastq [2024-06-21 08:29:53,728] multiqc [DEBUG ] No samples found: interop [2024-06-21 08:29:53,730] multiqc [DEBUG ] No samples found: ivar [2024-06-21 08:29:53,733] multiqc [DEBUG ] No samples found: flash [2024-06-21 08:29:53,736] multiqc [DEBUG ] No samples found: seqyclean [2024-06-21 08:29:53,736] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2024-06-21 08:29:53,736] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2024-06-21 08:29:53,736] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2024-06-21 08:29:53,737] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2024-06-21 08:29:53,737] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2024-06-21 08:29:53,737] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2024-06-21 08:29:53,737] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2024-06-21 08:29:53,737] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2024-06-21 08:29:53,737] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2024-06-21 08:29:53,737] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-06-21 08:29:53,737] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2024-06-21 08:29:53,737] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2024-06-21 08:29:53,737] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2024-06-21 08:29:53,737] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2024-06-21 08:29:53,737] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-06-21 08:29:53,737] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2024-06-21 08:29:53,737] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2024-06-21 08:29:53,737] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2024-06-21 08:29:53,737] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2024-06-21 08:29:53,737] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2024-06-21 08:29:53,737] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2024-06-21 08:29:53,737] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2024-06-21 08:29:53,737] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2024-06-21 08:29:53,737] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2024-06-21 08:29:53,737] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2024-06-21 08:29:53,737] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2024-06-21 08:29:53,737] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2024-06-21 08:29:53,737] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2024-06-21 08:29:53,737] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2024-06-21 08:29:53,737] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2024-06-21 08:29:53,785] multiqc [INFO ] Compressing plot data [2024-06-21 08:29:54,521] multiqc [INFO ] Report : multiqc_report.html [2024-06-21 08:29:54,522] multiqc [INFO ] Data : multiqc_data [2024-06-21 08:29:54,522] multiqc [DEBUG ] Moving data file from '/state/partition1/job-47760481/tmpzyq6gy5f/multiqc_data' to '/vast/gencore/GENEFLOW/work/69/fd6f5da45426bbe84ad353596a73d1/merged/multiqc_data' [2024-06-21 08:29:54,661] multiqc [INFO ] MultiQC complete