Sample per_base_sequence_quality per_sequence_quality_scores avg_sequence_length Filename Sequences flagged as poor quality File type Encoding Sequence length Total Sequences sequence_duplication_levels sequence_length_distribution per_sequence_gc_content adapter_content per_tile_sequence_quality overrepresented_sequences per_base_sequence_content kmer_content per_base_n_content %GC basic_statistics total_deduplicated_percentage HWKGGAFXX_n01_ah119spike-gh2ax-chip_0118 pass pass 100.0 HWKGGAFXX_n01_ah119spike-gh2ax-chip_0118.fastq.gz 0.0 Conventional base calls Sanger / Illumina 1.9 100.0 5475389.0 pass pass pass pass pass pass fail fail pass 39.0 pass 80.80710586122221 HWKGGAFXX_n01_ah119spike-gh2ax-inp_0118 pass pass 100.0 HWKGGAFXX_n01_ah119spike-gh2ax-inp_0118.fastq.gz 0.0 Conventional base calls Sanger / Illumina 1.9 100.0 5918155.0 pass pass pass pass pass warn fail fail pass 38.0 pass 78.68731938632176 HWKGGAFXX_n01_ah4206spike-gh2ax-chip_0118 pass pass 100.0 HWKGGAFXX_n01_ah4206spike-gh2ax-chip_0118.fastq.gz 0.0 Conventional base calls Sanger / Illumina 1.9 100.0 5578303.0 pass pass pass pass pass warn warn fail pass 40.0 pass 70.84368873249684 HWKGGAFXX_n01_ah4206spike-gh2ax-inp_0118 pass pass 100.0 HWKGGAFXX_n01_ah4206spike-gh2ax-inp_0118.fastq.gz 0.0 Conventional base calls Sanger / Illumina 1.9 100.0 7006523.0 pass pass pass pass pass pass warn fail pass 38.0 pass 75.50995901173164 HWKGGAFXX_n01_ah7011spike-gh2ax-chip_0118 pass pass 100.0 HWKGGAFXX_n01_ah7011spike-gh2ax-chip_0118.fastq.gz 0.0 Conventional base calls Sanger / Illumina 1.9 100.0 6236565.0 pass pass pass pass pass pass warn fail pass 39.0 pass 78.97100736411757 HWKGGAFXX_n01_ah7011spike-gh2ax-inp_0118 pass pass 100.0 HWKGGAFXX_n01_ah7011spike-gh2ax-inp_0118.fastq.gz 0.0 Conventional base calls Sanger / Illumina 1.9 100.0 5847964.0 pass pass warn pass pass fail warn fail pass 39.0 pass 77.52068273962523 HWKGGAFXX_n01_ah7011spike-red1-chip_0118 pass pass 100.0 HWKGGAFXX_n01_ah7011spike-red1-chip_0118.fastq.gz 0.0 Conventional base calls Sanger / Illumina 1.9 100.0 6315091.0 pass pass warn pass pass warn warn fail pass 39.0 pass 77.17137718847367 HWKGGAFXX_n01_ah7011spike-red1-inp_0118 pass pass 100.0 HWKGGAFXX_n01_ah7011spike-red1-inp_0118.fastq.gz 0.0 Conventional base calls Sanger / Illumina 1.9 100.0 6631561.0 pass pass pass pass pass warn warn fail pass 38.0 pass 77.75200190913377 HWKGGAFXX_n01_ah8115spike-red1-chip_0118 pass pass 100.0 HWKGGAFXX_n01_ah8115spike-red1-chip_0118.fastq.gz 0.0 Conventional base calls Sanger / Illumina 1.9 100.0 6174021.0 pass pass pass pass pass warn warn fail pass 39.0 pass 70.01475421895535 HWKGGAFXX_n01_ah8115spike-red1-inp_0118 pass pass 100.0 HWKGGAFXX_n01_ah8115spike-red1-inp_0118.fastq.gz 0.0 Conventional base calls Sanger / Illumina 1.9 100.0 5545155.0 pass pass warn pass pass fail warn fail pass 38.0 pass 76.27376633746046 HWKGGAFXX_n01_ah8151spike-red1-chip_0118 pass pass 100.0 HWKGGAFXX_n01_ah8151spike-red1-chip_0118.fastq.gz 0.0 Conventional base calls Sanger / Illumina 1.9 100.0 5515194.0 pass pass pass pass pass fail warn fail pass 39.0 pass 71.95077468141572 HWKGGAFXX_n01_ah8151spike-red1-inp_0118 pass pass 100.0 HWKGGAFXX_n01_ah8151spike-red1-inp_0118.fastq.gz 0.0 Conventional base calls Sanger / Illumina 1.9 100.0 5831039.0 pass pass warn pass pass fail fail fail pass 38.0 pass 78.48377940342577 HWKGGAFXX_n01_ah8218spike-gh2ax-chip_0118 pass pass 100.0 HWKGGAFXX_n01_ah8218spike-gh2ax-chip_0118.fastq.gz 0.0 Conventional base calls Sanger / Illumina 1.9 100.0 5407794.0 pass pass pass pass pass pass warn fail pass 39.0 pass 81.89171251951062 HWKGGAFXX_n01_ah8218spike-gh2ax-inp_0118 pass pass 100.0 HWKGGAFXX_n01_ah8218spike-gh2ax-inp_0118.fastq.gz 0.0 Conventional base calls Sanger / Illumina 1.9 100.0 5879933.0 pass pass pass pass pass warn warn fail pass 38.0 pass 79.54479159074401 HWKGGAFXX_n01_ah8218spike-red1-chip_0118 pass pass 100.0 HWKGGAFXX_n01_ah8218spike-red1-chip_0118.fastq.gz 0.0 Conventional base calls Sanger / Illumina 1.9 100.0 5583616.0 pass pass warn pass pass warn warn fail pass 39.0 pass 74.5660575523085 HWKGGAFXX_n01_ah8218spike-red1-inp_0118 pass pass 100.0 HWKGGAFXX_n01_ah8218spike-red1-inp_0118.fastq.gz 0.0 Conventional base calls Sanger / Illumina 1.9 100.0 6297478.0 pass pass warn pass pass fail warn fail pass 39.0 pass 76.73418575440756 HWKGGAFXX_n01_ah8219spike-gh2ax-chip_0118 pass pass 100.0 HWKGGAFXX_n01_ah8219spike-gh2ax-chip_0118.fastq.gz 0.0 Conventional base calls Sanger / Illumina 1.9 100.0 7156683.0 pass pass pass pass pass warn warn fail pass 39.0 pass 77.66165961458992 HWKGGAFXX_n01_ah8219spike-gh2ax-inp_0118 pass pass 100.0 HWKGGAFXX_n01_ah8219spike-gh2ax-inp_0118.fastq.gz 0.0 Conventional base calls Sanger / Illumina 1.9 100.0 6654392.0 pass pass warn pass pass pass warn fail pass 38.0 pass 77.4341171584866 HWKGGAFXX_n01_ah8219spike-red1-chip_0118 pass pass 100.0 HWKGGAFXX_n01_ah8219spike-red1-chip_0118.fastq.gz 0.0 Conventional base calls Sanger / Illumina 1.9 100.0 5404973.0 pass pass warn pass pass fail warn fail pass 38.0 pass 76.76278091002808 HWKGGAFXX_n01_ah8219spike-red1-inp_0118 pass pass 100.0 HWKGGAFXX_n01_ah8219spike-red1-inp_0118.fastq.gz 0.0 Conventional base calls Sanger / Illumina 1.9 100.0 5734694.0 pass pass warn pass pass warn fail fail pass 38.0 pass 78.478414881485 HWKGGAFXX_n01_ah8220spike-gh2ax-chip_0118 pass pass 100.0 HWKGGAFXX_n01_ah8220spike-gh2ax-chip_0118.fastq.gz 0.0 Conventional base calls Sanger / Illumina 1.9 100.0 6012785.0 pass pass pass pass pass warn warn fail pass 39.0 pass 79.63330161515393 HWKGGAFXX_n01_ah8220spike-gh2ax-inp_0118 pass pass 100.0 HWKGGAFXX_n01_ah8220spike-gh2ax-inp_0118.fastq.gz 0.0 Conventional base calls Sanger / Illumina 1.9 100.0 6206920.0 pass pass pass pass pass pass warn fail pass 39.0 pass 78.9293638780853 HWKGGAFXX_n01_ah8220spike-red1-chip_0118 pass pass 100.0 HWKGGAFXX_n01_ah8220spike-red1-chip_0118.fastq.gz 0.0 Conventional base calls Sanger / Illumina 1.9 100.0 5870464.0 pass pass pass pass pass warn fail fail pass 38.0 pass 76.00731929226757 HWKGGAFXX_n01_ah8220spike-red1-inp_0118 pass pass 100.0 HWKGGAFXX_n01_ah8220spike-red1-inp_0118.fastq.gz 0.0 Conventional base calls Sanger / Illumina 1.9 100.0 5582685.0 pass pass warn pass pass fail warn fail pass 38.0 pass 77.26900671802936