FastQCFastQC Report
Wed 17 Jan 2018
HWKGGAFXX_n01_ah4206spike-gh2ax-inp_0118.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHWKGGAFXX_n01_ah4206spike-gh2ax-inp_0118.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7006523
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG19900.07.910866374-75
GCCGTCT21400.07.803740550-51
TGCCGTC23700.07.741132750-51
GTATGCC25750.06.576125646-47
AAGGGGG23000.06.53814474-75
ATGCCGT29850.06.38255148-49
TATCTCG25150.06.262420740-41
TATGCCG29700.06.01881148-49
CGTATGC31000.05.614160546-47
TCGTATG36850.05.551650544-45
CTCGTAT30200.05.528301744-45
TCTCGTA33800.05.077686342-43
Produced by FastQC (version 0.11.2)