HWKGGAFXX_n01_ah119spike-gh2ax-chip_0118.fastq.gz FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	HWKGGAFXX_n01_ah119spike-gh2ax-chip_0118.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5475389
Sequences flagged as poor quality	0
Sequence length	100
%GC	39

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	1150	0.0	9.398913	72-73
GCCGTCT	1590	0.0	7.988164	48-49
AAGGGGG	1415	0.0	7.8047514	72-73
CGATCTC	1715	0.0	7.5360885	38-39
TGCCGTC	2020	0.0	7.3356647	48-49
TATGCCG	2035	0.0	7.0502386	46-47
CACGATC	1815	0.0	6.860714	36-37
GATCTCG	1900	0.0	6.554954	38-39
CGTATGC	2400	0.0	6.3689675	44-45
CTCGTAT	2505	0.0	6.288552	42-43
GTATGCC	2215	0.0	6.1577377	44-45
CCGTCTT	2835	0.0	6.056588	50-51
ATGCCGT	2395	0.0	5.7940855	46-47
ATCTCGT	2630	0.0	5.6312504	40-41
TCTCGTA	2625	0.0	5.283756	40-41
AAAGGGG	2190	0.0	5.1514306	70-71
CAGTCAC	3625	3.6379788E-12	5.054813	94