HWKFWAFXX_n01_vs10_180118.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HWKFWAFXX_n01_vs10_180118.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	6796567
Sequences flagged as poor quality	0
Sequence length	50
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCCGATCTCGTAT	188940	2.7799328690499188	TruSeq Adapter, Index 16 (97% over 40bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCCGAGCTCGTAT	22233	0.32712103036724277	TruSeq Adapter, Index 16 (97% over 40bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCCGCTCTCGTAT	20011	0.29442805463405275	TruSeq Adapter, Index 16 (97% over 44bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	10999	0.16183170121033164	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCCGATGTCGTAT	6965	0.10247820701245203	TruSeq Adapter, Index 16 (97% over 40bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCACACG	32195	43.183582	11
GATCGGA	31455	42.961838	1
CGTCCCG	30960	42.94477	35
ACGTCTG	32505	42.717598	15
GAGCACA	32600	42.715206	9
ACACGTC	32590	42.70068	13
AGCACAC	32565	42.69969	10
GTCCCGA	27915	42.664577	36
CACGTCT	32635	42.594616	14
CACACGT	32655	42.56853	12
CCCGTCC	31425	42.533634	33
CGTCTGA	32500	42.5008	16
ACCCGTC	31160	42.416233	32
TCACCCG	31290	42.381863	30
AGAGCAC	32990	42.376945	8
CCCGATC	22965	42.272457	38
CCGTCCC	31445	42.247734	34
GTCACCC	31490	42.21872	29
TCCAGTC	32370	42.15841	25
CACCCGT	31470	42.06225	31