HWK5TBGX5_n01_las83.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HWK5TBGX5_n01_las83.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	12014281
Sequences flagged as poor quality	0
Sequence length	76
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGC	1203856	10.020208450260153	TruSeq Adapter, Index 1 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	76398	0.6358932340603654	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATATCGTATGC	32296	0.2688134229588937	TruSeq Adapter, Index 1 (98% over 50bp)
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	26625	0.22161126412808224	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGCTCTCGTATGC	22900	0.19060649571955243	TruSeq Adapter, Index 1 (98% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGAGCTCGTATGC	15720	0.13084428439787615	TruSeq Adapter, Index 1 (98% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	141990	68.30258	44
GTATGCC	141950	68.2306	45
TATGCCG	141970	68.17907	46
ATGCCGT	141905	68.114975	47
GCCGTCT	141305	68.09706	49
TCGTATG	142180	68.04855	43
CTCGTAT	136570	68.01973	42
TGCCGTC	142040	67.93688	48
CACGATC	130710	67.82956	36
ACGATCT	131055	67.77652	37
GATCTCG	131880	67.76122	39
CGATCTC	131390	67.76087	38
CTGCTTG	141165	67.51777	57
CATCACG	141870	67.479355	33
CCGTCTT	142510	67.474884	50
TCACGAT	136920	67.32211	35
TCTCGTA	135895	67.31738	41
ATCACGA	139550	67.146545	34
CAGTCAC	145070	67.073555	27
TGCTTGA	142840	66.846375	58