Sample Filename File type Encoding Total Sequences Sequences flagged as poor quality Sequence length %GC total_deduplicated_percentage avg_sequence_length basic_statistics per_base_sequence_quality per_tile_sequence_quality per_sequence_quality_scores per_base_sequence_content per_sequence_gc_content per_base_n_content sequence_length_distribution sequence_duplication_levels overrepresented_sequences adapter_content HWGTLAFX2_n01_N1_001 HWGTLAFX2_n01_N1_001.fastq.gz Conventional base calls Sanger / Illumina 1.9 24738587.0 0.0 76.0 52.0 34.19317184198009 76.0 pass pass pass pass fail pass pass pass fail warn pass HWGTLAFX2_n01_N1_002 HWGTLAFX2_n01_N1_002.fastq.gz Conventional base calls Sanger / Illumina 1.9 27118616.0 0.0 76.0 47.0 43.89663643100974 76.0 pass pass pass pass fail pass pass pass fail warn pass HWGTLAFX2_n01_N1_003 HWGTLAFX2_n01_N1_003.fastq.gz Conventional base calls Sanger / Illumina 1.9 23940015.0 0.0 76.0 46.0 43.408455390360515 76.0 pass pass pass pass fail warn pass pass fail warn pass HWGTLAFX2_n01_WT001 HWGTLAFX2_n01_WT001.fastq.gz Conventional base calls Sanger / Illumina 1.9 25739448.0 0.0 76.0 51.0 36.32206528068263 76.0 pass pass pass pass fail warn pass pass fail warn pass HWGTLAFX2_n01_WT002 HWGTLAFX2_n01_WT002.fastq.gz Conventional base calls Sanger / Illumina 1.9 22406861.0 0.0 76.0 52.0 31.50086800122215 76.0 pass pass pass pass warn warn pass pass fail warn pass HWGTLAFX2_n01_WT003 HWGTLAFX2_n01_WT003.fastq.gz Conventional base calls Sanger / Illumina 1.9 22155240.0 0.0 76.0 52.0 36.88056590977033 76.0 pass pass pass pass fail warn pass pass fail warn pass HWGTLAFX2_n01_WT004 HWGTLAFX2_n01_WT004.fastq.gz Conventional base calls Sanger / Illumina 1.9 37247528.0 0.0 76.0 50.0 31.086686854274383 76.0 pass pass pass pass fail pass pass pass fail warn pass HWGTLAFX2_n01_undetermined HWGTLAFX2_n01_undetermined.fastq.gz Conventional base calls Sanger / Illumina 1.9 6084647.0 0.0 76.0 46.0 38.468230689184296 76.0 pass pass pass pass pass fail pass pass fail pass pass HWGTLAFX2_n02_N1_001 HWGTLAFX2_n02_N1_001.fastq.gz Conventional base calls Sanger / Illumina 1.9 24738587.0 0.0 76.0 52.0 36.83412317676171 76.0 pass pass pass pass warn warn pass pass fail warn pass HWGTLAFX2_n02_N1_002 HWGTLAFX2_n02_N1_002.fastq.gz Conventional base calls Sanger / Illumina 1.9 27118616.0 0.0 76.0 48.0 46.762647516254304 76.0 pass pass pass pass fail pass pass pass fail warn pass HWGTLAFX2_n02_N1_003 HWGTLAFX2_n02_N1_003.fastq.gz Conventional base calls Sanger / Illumina 1.9 23940015.0 0.0 76.0 46.0 45.650795390545404 76.0 pass pass pass pass fail warn pass pass fail warn pass HWGTLAFX2_n02_WT001 HWGTLAFX2_n02_WT001.fastq.gz Conventional base calls Sanger / Illumina 1.9 25739448.0 0.0 76.0 52.0 39.160968372958145 76.0 pass pass pass pass warn warn pass pass fail warn pass HWGTLAFX2_n02_WT002 HWGTLAFX2_n02_WT002.fastq.gz Conventional base calls Sanger / Illumina 1.9 22406861.0 0.0 76.0 53.0 34.62263727386398 76.0 pass pass pass pass warn warn pass pass fail warn pass HWGTLAFX2_n02_WT003 HWGTLAFX2_n02_WT003.fastq.gz Conventional base calls Sanger / Illumina 1.9 22155240.0 0.0 76.0 52.0 39.168545943372976 76.0 pass pass pass pass warn warn pass pass fail warn pass HWGTLAFX2_n02_WT004 HWGTLAFX2_n02_WT004.fastq.gz Conventional base calls Sanger / Illumina 1.9 37247528.0 0.0 76.0 51.0 33.404538981046485 76.0 pass pass pass pass warn warn pass pass fail warn pass HWGTLAFX2_n02_undetermined HWGTLAFX2_n02_undetermined.fastq.gz Conventional base calls Sanger / Illumina 1.9 6084647.0 0.0 76.0 47.0 41.309859811821 76.0 pass pass pass pass pass fail pass pass fail fail pass