[2021-02-01 15:58:18,437] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2021-02-01 15:58:18,437] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2021-02-01 15:58:18,438] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2021-02-01 15:58:18,439] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2021-02-01 15:58:18,439] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}} [2021-02-01 15:58:18,439] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HWGLYDRXX/merged [2021-02-01 15:58:20,043] multiqc [DEBUG ] Latest MultiQC version is v1.9 [2021-02-01 15:58:20,043] multiqc [INFO ] This is MultiQC v1.9 [2021-02-01 15:58:20,043] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HWGLYDRXX/merged [2021-02-01 15:58:20,043] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HWGLYDRXX/merged [2021-02-01 15:58:20,043] multiqc [INFO ] Template : default [2021-02-01 15:58:20,043] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2021-02-01 15:58:20,043] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HWGLYDRXX/merged [2021-02-01 15:58:20,043] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2021-02-01 15:58:20,043] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-2038824/tmp77o0hgdy [2021-02-01 15:58:20,151] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R05_fastqc.html [2021-02-01 15:58:20,153] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R05_fastqc.html [2021-02-01 15:58:20,220] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-02-01 15:58:20,222] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-02-01 15:58:20,222] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-02-01 15:58:20,222] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-02-01 15:58:20,222] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-02-01 15:58:20,222] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-02-01 15:58:20,223] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-02-01 15:58:20,946] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R09_fastqc.html [2021-02-01 15:58:20,948] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R09_fastqc.html [2021-02-01 15:58:20,948] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R09_fastqc.html [2021-02-01 15:58:20,948] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R09_fastqc.html [2021-02-01 15:58:20,948] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R09_fastqc.html [2021-02-01 15:58:20,948] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R09_fastqc.html [2021-02-01 15:58:20,948] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R09_fastqc.html [2021-02-01 15:58:21,018] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R19_fastqc.html [2021-02-01 15:58:21,019] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R19_fastqc.html [2021-02-01 15:58:21,076] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R22_fastqc.html [2021-02-01 15:58:21,078] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R22_fastqc.html [2021-02-01 15:58:21,156] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R24_fastqc.html [2021-02-01 15:58:21,158] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R24_fastqc.html [2021-02-01 15:58:21,158] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R24_fastqc.html [2021-02-01 15:58:21,158] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R24_fastqc.html [2021-02-01 15:58:21,158] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R24_fastqc.html [2021-02-01 15:58:21,158] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R24_fastqc.html [2021-02-01 15:58:21,158] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R24_fastqc.html [2021-02-01 15:58:21,228] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R18_fastqc.html [2021-02-01 15:58:21,229] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R18_fastqc.html [2021-02-01 15:58:21,286] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R15_fastqc.html [2021-02-01 15:58:21,287] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R15_fastqc.html [2021-02-01 15:58:21,345] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R13_fastqc.html [2021-02-01 15:58:21,346] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R13_fastqc.html [2021-02-01 15:58:21,403] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R10_fastqc.html [2021-02-01 15:58:21,405] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R10_fastqc.html [2021-02-01 15:58:21,405] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R10_fastqc.html [2021-02-01 15:58:21,405] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R10_fastqc.html [2021-02-01 15:58:21,405] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R10_fastqc.html [2021-02-01 15:58:21,405] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R10_fastqc.html [2021-02-01 15:58:21,405] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R10_fastqc.html [2021-02-01 15:58:21,475] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R16_fastqc.html [2021-02-01 15:58:21,476] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R16_fastqc.html [2021-02-01 15:58:21,534] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWGLYDRXX_n01_undetermined_fastqc.html [2021-02-01 15:58:21,535] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWGLYDRXX_n01_undetermined_fastqc.html [2021-02-01 15:58:21,587] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R14_fastqc.html [2021-02-01 15:58:21,589] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R14_fastqc.html [2021-02-01 15:58:21,646] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R07_fastqc.html [2021-02-01 15:58:21,647] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R07_fastqc.html [2021-02-01 15:58:21,647] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R07_fastqc.html [2021-02-01 15:58:21,647] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R07_fastqc.html [2021-02-01 15:58:21,647] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R07_fastqc.html [2021-02-01 15:58:21,648] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R07_fastqc.html [2021-02-01 15:58:21,648] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R07_fastqc.html [2021-02-01 15:58:21,716] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R20_fastqc.html [2021-02-01 15:58:21,718] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R20_fastqc.html [2021-02-01 15:58:21,774] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R17_fastqc.html [2021-02-01 15:58:21,776] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R17_fastqc.html [2021-02-01 15:58:21,833] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R08_fastqc.html [2021-02-01 15:58:21,835] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R08_fastqc.html [2021-02-01 15:58:21,835] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R08_fastqc.html [2021-02-01 15:58:21,835] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R08_fastqc.html [2021-02-01 15:58:21,835] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R08_fastqc.html [2021-02-01 15:58:21,835] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R08_fastqc.html [2021-02-01 15:58:21,835] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R08_fastqc.html [2021-02-01 15:58:21,904] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R04_fastqc.html [2021-02-01 15:58:21,906] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R04_fastqc.html [2021-02-01 15:58:21,906] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R04_fastqc.html [2021-02-01 15:58:21,906] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R04_fastqc.html [2021-02-01 15:58:21,906] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R04_fastqc.html [2021-02-01 15:58:21,906] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R04_fastqc.html [2021-02-01 15:58:21,906] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R04_fastqc.html [2021-02-01 15:58:21,975] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R23_fastqc.html [2021-02-01 15:58:21,977] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R23_fastqc.html [2021-02-01 15:58:22,034] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R06_fastqc.html [2021-02-01 15:58:22,035] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R06_fastqc.html [2021-02-01 15:58:22,147] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R03_fastqc.html [2021-02-01 15:58:22,148] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R03_fastqc.html [2021-02-01 15:58:22,149] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R03_fastqc.html [2021-02-01 15:58:22,149] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R03_fastqc.html [2021-02-01 15:58:22,149] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R03_fastqc.html [2021-02-01 15:58:22,149] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R03_fastqc.html [2021-02-01 15:58:22,149] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R03_fastqc.html [2021-02-01 15:58:22,220] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R21_fastqc.html [2021-02-01 15:58:22,221] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWGLYDRXX_n01_Cas13_del_R21_fastqc.html [2021-02-01 15:58:22,682] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2021-02-01 15:58:22,683] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2021-02-01 15:58:22,700] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 21 samples (table) [2021-02-01 15:58:22,702] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2021-02-01 15:58:22,712] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2021-02-01 15:58:22,716] multiqc [DEBUG ] No samples found: conpair [2021-02-01 15:58:22,720] multiqc [DEBUG ] No samples found: peddy [2021-02-01 15:58:22,725] multiqc [DEBUG ] No samples found: somalier [2021-02-01 15:58:22,729] multiqc [DEBUG ] No samples found: methylQA [2021-02-01 15:58:22,736] multiqc [DEBUG ] No samples found: mosdepth [2021-02-01 15:58:22,740] multiqc [DEBUG ] No samples found: phantompeakqualtools [2021-02-01 15:58:22,743] multiqc [DEBUG ] No samples found: qualimap [2021-02-01 15:58:22,747] multiqc [DEBUG ] No samples found: preseq [2021-02-01 15:58:22,752] multiqc [DEBUG ] No samples found: quast [2021-02-01 15:58:22,756] multiqc [DEBUG ] No samples found: qorts [2021-02-01 15:58:22,760] multiqc [DEBUG ] No samples found: rna_seqc [2021-02-01 15:58:22,764] multiqc [DEBUG ] No samples found: rockhopper [2021-02-01 15:58:22,768] multiqc [DEBUG ] No samples found: rsem [2021-02-01 15:58:22,777] multiqc [DEBUG ] No samples found: rseqc [2021-02-01 15:58:22,781] multiqc [DEBUG ] No samples found: busco [2021-02-01 15:58:22,786] multiqc [DEBUG ] No samples found: goleft_indexcov [2021-02-01 15:58:22,790] multiqc [DEBUG ] No samples found: disambiguate [2021-02-01 15:58:22,794] multiqc [DEBUG ] No samples found: supernova [2021-02-01 15:58:22,804] multiqc [DEBUG ] No samples found: deeptools [2021-02-01 15:58:22,809] multiqc [DEBUG ] No samples found: sargasso [2021-02-01 15:58:22,813] multiqc [DEBUG ] No samples found: verifybamid [2021-02-01 15:58:22,817] multiqc [DEBUG ] No samples found: mirtrace [2021-02-01 15:58:22,821] multiqc [DEBUG ] No samples found: happy [2021-02-01 15:58:22,825] multiqc [DEBUG ] No samples found: mirtop [2021-02-01 15:58:22,831] multiqc [DEBUG ] No samples found: homer [2021-02-01 15:58:22,835] multiqc [DEBUG ] No samples found: macs2 [2021-02-01 15:58:22,839] multiqc [DEBUG ] No samples found: theta2 [2021-02-01 15:58:22,843] multiqc [DEBUG ] No samples found: snpeff [2021-02-01 15:58:22,849] multiqc [DEBUG ] No samples found: gatk [2021-02-01 15:58:22,853] multiqc [DEBUG ] No samples found: htseq [2021-02-01 15:58:22,858] multiqc [DEBUG ] No samples found: bcftools [2021-02-01 15:58:22,861] multiqc [DEBUG ] No samples found: featureCounts [2021-02-01 15:58:22,867] multiqc [DEBUG ] No samples found: fgbio [2021-02-01 15:58:22,877] multiqc [DEBUG ] No samples found: dragen [2021-02-01 15:58:22,882] multiqc [DEBUG ] No samples found: dedup [2021-02-01 15:58:22,886] multiqc [DEBUG ] No samples found: damageprofiler [2021-02-01 15:58:22,903] multiqc [DEBUG ] No samples found: biobambam2 [2021-02-01 15:58:22,907] multiqc [DEBUG ] No samples found: mtnucratio [2021-02-01 15:58:22,910] multiqc [DEBUG ] No samples found: picard [2021-02-01 15:58:22,914] multiqc [DEBUG ] No samples found: prokka [2021-02-01 15:58:22,918] multiqc [DEBUG ] No samples found: samblaster [2021-02-01 15:58:22,925] multiqc [DEBUG ] No samples found: samtools [2021-02-01 15:58:22,929] multiqc [DEBUG ] No samples found: sexdeterrmine [2021-02-01 15:58:22,933] multiqc [DEBUG ] No samples found: bamtools [2021-02-01 15:58:22,937] multiqc [DEBUG ] No samples found: jellyfish [2021-02-01 15:58:22,944] multiqc [DEBUG ] No samples found: vcftools [2021-02-01 15:58:22,948] multiqc [DEBUG ] No samples found: longranger [2021-02-01 15:58:22,952] multiqc [DEBUG ] No samples found: stacks [2021-02-01 15:58:22,956] multiqc [DEBUG ] No samples found: varscan2 [2021-02-01 15:58:22,968] multiqc [DEBUG ] No samples found: bbmap [2021-02-01 15:58:22,972] multiqc [DEBUG ] No samples found: bismark [2021-02-01 15:58:22,976] multiqc [DEBUG ] No samples found: biscuit [2021-02-01 15:58:22,980] multiqc [DEBUG ] No samples found: hicexplorer [2021-02-01 15:58:22,984] multiqc [DEBUG ] No samples found: hicup [2021-02-01 15:58:22,989] multiqc [DEBUG ] No samples found: hicpro [2021-02-01 15:58:22,993] multiqc [DEBUG ] No samples found: salmon [2021-02-01 15:58:22,997] multiqc [DEBUG ] No samples found: kallisto [2021-02-01 15:58:23,001] multiqc [DEBUG ] No samples found: slamdunk [2021-02-01 15:58:23,005] multiqc [DEBUG ] No samples found: star [2021-02-01 15:58:23,009] multiqc [DEBUG ] No samples found: hisat2 [2021-02-01 15:58:23,013] multiqc [DEBUG ] No samples found: tophat [2021-02-01 15:58:23,018] multiqc [DEBUG ] No samples found: bowtie2 [2021-02-01 15:58:23,022] multiqc [DEBUG ] No samples found: bowtie1 [2021-02-01 15:58:23,026] multiqc [DEBUG ] No samples found: snpsplit [2021-02-01 15:58:23,030] multiqc [DEBUG ] No samples found: kat [2021-02-01 15:58:23,034] multiqc [DEBUG ] No samples found: leehom [2021-02-01 15:58:23,038] multiqc [DEBUG ] No samples found: adapterRemoval [2021-02-01 15:58:23,042] multiqc [DEBUG ] No samples found: clipandmerge [2021-02-01 15:58:23,046] multiqc [DEBUG ] No samples found: cutadapt [2021-02-01 15:58:23,050] multiqc [DEBUG ] No samples found: flexbar [2021-02-01 15:58:23,055] multiqc [DEBUG ] No samples found: kaiju [2021-02-01 15:58:23,059] multiqc [DEBUG ] No samples found: kraken [2021-02-01 15:58:23,063] multiqc [DEBUG ] No samples found: malt [2021-02-01 15:58:23,067] multiqc [DEBUG ] No samples found: trimmomatic [2021-02-01 15:58:23,071] multiqc [DEBUG ] No samples found: sickle [2021-02-01 15:58:23,075] multiqc [DEBUG ] No samples found: skewer [2021-02-01 15:58:23,079] multiqc [DEBUG ] No samples found: sortmerna [2021-02-01 15:58:23,083] multiqc [DEBUG ] No samples found: biobloomtools [2021-02-01 15:58:23,088] multiqc [DEBUG ] No samples found: fastq_screen [2021-02-01 15:58:23,092] multiqc [DEBUG ] No samples found: afterqc [2021-02-01 15:58:23,096] multiqc [DEBUG ] No samples found: fastp [2021-02-01 15:58:24,088] multiqc.modules.fastqc.fastqc [INFO ] Found 21 reports [2021-02-01 15:58:24,401] multiqc [DEBUG ] No samples found: pycoqc [2021-02-01 15:58:24,405] multiqc [DEBUG ] No samples found: minionqc [2021-02-01 15:58:24,409] multiqc [DEBUG ] No samples found: multivcfanalyzer [2021-02-01 15:58:24,414] multiqc [DEBUG ] No samples found: clusterflow [2021-02-01 15:58:24,418] multiqc [DEBUG ] No samples found: bcl2fastq [2021-02-01 15:58:24,422] multiqc [DEBUG ] No samples found: interop [2021-02-01 15:58:24,426] multiqc [DEBUG ] No samples found: ivar [2021-02-01 15:58:24,430] multiqc [DEBUG ] No samples found: flash [2021-02-01 15:58:24,435] multiqc [DEBUG ] No samples found: seqyclean [2021-02-01 15:58:24,435] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2021-02-01 15:58:24,435] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2021-02-01 15:58:24,435] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2021-02-01 15:58:24,435] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2021-02-01 15:58:24,462] multiqc [INFO ] Compressing plot data [2021-02-01 15:58:24,764] multiqc [INFO ] Report : multiqc_report.html [2021-02-01 15:58:24,764] multiqc [INFO ] Data : multiqc_data [2021-02-01 15:58:24,764] multiqc [DEBUG ] Moving data file from '/state/partition1/job-2038824/tmp77o0hgdy/multiqc_data' to '/scratch/gencore/logs/html/HWGLYDRXX/merged/multiqc_data' [2021-02-01 15:58:24,878] multiqc [INFO ] MultiQC complete