[2021-01-28 00:37:55,097] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2021-01-28 00:37:55,097] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2021-01-28 00:37:55,097] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2021-01-28 00:37:55,098] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2021-01-28 00:37:55,098] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}} [2021-01-28 00:37:55,098] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HWGC5DRXX/merged [2021-01-28 00:37:56,495] multiqc [DEBUG ] Latest MultiQC version is v1.9 [2021-01-28 00:37:56,495] multiqc [INFO ] This is MultiQC v1.9 [2021-01-28 00:37:56,495] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HWGC5DRXX/merged [2021-01-28 00:37:56,495] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HWGC5DRXX/merged [2021-01-28 00:37:56,496] multiqc [INFO ] Template : default [2021-01-28 00:37:56,496] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2021-01-28 00:37:56,496] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HWGC5DRXX/merged [2021-01-28 00:37:56,496] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2021-01-28 00:37:56,496] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-1820352/tmpnj_yizer [2021-01-28 00:37:56,626] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWGC5DRXX_3_fastqc.html [2021-01-28 00:37:56,628] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWGC5DRXX_3_fastqc.html [2021-01-28 00:37:56,690] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWGC5DRXX_2_fastqc.html [2021-01-28 00:37:56,692] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWGC5DRXX_2_fastqc.html [2021-01-28 00:37:56,733] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HWGC5DRXX_1_fastqc.html [2021-01-28 00:37:56,735] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HWGC5DRXX_1_fastqc.html [2021-01-28 00:37:57,161] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2021-01-28 00:37:57,162] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2021-01-28 00:37:57,166] multiqc.modules.custom_content.custom_content [WARNING] Not able to parse custom data in undetermined_barcodes_mqc.txt [2021-01-28 00:37:57,168] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2021-01-28 00:37:57,172] multiqc [DEBUG ] No samples found: conpair [2021-01-28 00:37:57,176] multiqc [DEBUG ] No samples found: peddy [2021-01-28 00:37:57,183] multiqc [DEBUG ] No samples found: somalier [2021-01-28 00:37:57,187] multiqc [DEBUG ] No samples found: methylQA [2021-01-28 00:37:57,193] multiqc [DEBUG ] No samples found: mosdepth [2021-01-28 00:37:57,197] multiqc [DEBUG ] No samples found: phantompeakqualtools [2021-01-28 00:37:57,200] multiqc [DEBUG ] No samples found: qualimap [2021-01-28 00:37:57,204] multiqc [DEBUG ] No samples found: preseq [2021-01-28 00:37:57,207] multiqc [DEBUG ] No samples found: quast [2021-01-28 00:37:57,211] multiqc [DEBUG ] No samples found: qorts [2021-01-28 00:37:57,215] multiqc [DEBUG ] No samples found: rna_seqc [2021-01-28 00:37:57,219] multiqc [DEBUG ] No samples found: rockhopper [2021-01-28 00:37:57,223] multiqc [DEBUG ] No samples found: rsem [2021-01-28 00:37:57,233] multiqc [DEBUG ] No samples found: rseqc [2021-01-28 00:37:57,236] multiqc [DEBUG ] No samples found: busco [2021-01-28 00:37:57,240] multiqc [DEBUG ] No samples found: goleft_indexcov [2021-01-28 00:37:57,244] multiqc [DEBUG ] No samples found: disambiguate [2021-01-28 00:37:57,248] multiqc [DEBUG ] No samples found: supernova [2021-01-28 00:37:57,258] multiqc [DEBUG ] No samples found: deeptools [2021-01-28 00:37:57,262] multiqc [DEBUG ] No samples found: sargasso [2021-01-28 00:37:57,266] multiqc [DEBUG ] No samples found: verifybamid [2021-01-28 00:37:57,270] multiqc [DEBUG ] No samples found: mirtrace [2021-01-28 00:37:57,274] multiqc [DEBUG ] No samples found: happy [2021-01-28 00:37:57,278] multiqc [DEBUG ] No samples found: mirtop [2021-01-28 00:37:57,283] multiqc [DEBUG ] No samples found: homer [2021-01-28 00:37:57,287] multiqc [DEBUG ] No samples found: macs2 [2021-01-28 00:37:57,291] multiqc [DEBUG ] No samples found: theta2 [2021-01-28 00:37:57,295] multiqc [DEBUG ] No samples found: snpeff [2021-01-28 00:37:57,300] multiqc [DEBUG ] No samples found: gatk [2021-01-28 00:37:57,304] multiqc [DEBUG ] No samples found: htseq [2021-01-28 00:37:57,309] multiqc [DEBUG ] No samples found: bcftools [2021-01-28 00:37:57,313] multiqc [DEBUG ] No samples found: featureCounts [2021-01-28 00:37:57,318] multiqc [DEBUG ] No samples found: fgbio [2021-01-28 00:37:57,330] multiqc [DEBUG ] No samples found: dragen [2021-01-28 00:37:57,334] multiqc [DEBUG ] No samples found: dedup [2021-01-28 00:37:57,338] multiqc [DEBUG ] No samples found: damageprofiler [2021-01-28 00:37:57,356] multiqc [DEBUG ] No samples found: biobambam2 [2021-01-28 00:37:57,361] multiqc [DEBUG ] No samples found: mtnucratio [2021-01-28 00:37:57,364] multiqc [DEBUG ] No samples found: picard [2021-01-28 00:37:57,368] multiqc [DEBUG ] No samples found: prokka [2021-01-28 00:37:57,372] multiqc [DEBUG ] No samples found: samblaster [2021-01-28 00:37:57,380] multiqc [DEBUG ] No samples found: samtools [2021-01-28 00:37:57,384] multiqc [DEBUG ] No samples found: sexdeterrmine [2021-01-28 00:37:57,388] multiqc [DEBUG ] No samples found: bamtools [2021-01-28 00:37:57,392] multiqc [DEBUG ] No samples found: jellyfish [2021-01-28 00:37:57,399] multiqc [DEBUG ] No samples found: vcftools [2021-01-28 00:37:57,403] multiqc [DEBUG ] No samples found: longranger [2021-01-28 00:37:57,407] multiqc [DEBUG ] No samples found: stacks [2021-01-28 00:37:57,411] multiqc [DEBUG ] No samples found: varscan2 [2021-01-28 00:37:57,423] multiqc [DEBUG ] No samples found: bbmap [2021-01-28 00:37:57,427] multiqc [DEBUG ] No samples found: bismark [2021-01-28 00:37:57,431] multiqc [DEBUG ] No samples found: biscuit [2021-01-28 00:37:57,435] multiqc [DEBUG ] No samples found: hicexplorer [2021-01-28 00:37:57,439] multiqc [DEBUG ] No samples found: hicup [2021-01-28 00:37:57,443] multiqc [DEBUG ] No samples found: hicpro [2021-01-28 00:37:57,447] multiqc [DEBUG ] No samples found: salmon [2021-01-28 00:37:57,450] multiqc [DEBUG ] No samples found: kallisto [2021-01-28 00:37:57,454] multiqc [DEBUG ] No samples found: slamdunk [2021-01-28 00:37:57,458] multiqc [DEBUG ] No samples found: star [2021-01-28 00:37:57,462] multiqc [DEBUG ] No samples found: hisat2 [2021-01-28 00:37:57,466] multiqc [DEBUG ] No samples found: tophat [2021-01-28 00:37:57,470] multiqc [DEBUG ] No samples found: bowtie2 [2021-01-28 00:37:57,474] multiqc [DEBUG ] No samples found: bowtie1 [2021-01-28 00:37:57,477] multiqc [DEBUG ] No samples found: snpsplit [2021-01-28 00:37:57,481] multiqc [DEBUG ] No samples found: kat [2021-01-28 00:37:57,484] multiqc [DEBUG ] No samples found: leehom [2021-01-28 00:37:57,489] multiqc [DEBUG ] No samples found: adapterRemoval [2021-01-28 00:37:57,492] multiqc [DEBUG ] No samples found: clipandmerge [2021-01-28 00:37:57,496] multiqc [DEBUG ] No samples found: cutadapt [2021-01-28 00:37:57,500] multiqc [DEBUG ] No samples found: flexbar [2021-01-28 00:37:57,504] multiqc [DEBUG ] No samples found: kaiju [2021-01-28 00:37:57,507] multiqc [DEBUG ] No samples found: kraken [2021-01-28 00:37:57,511] multiqc [DEBUG ] No samples found: malt [2021-01-28 00:37:57,515] multiqc [DEBUG ] No samples found: trimmomatic [2021-01-28 00:37:57,519] multiqc [DEBUG ] No samples found: sickle [2021-01-28 00:37:57,523] multiqc [DEBUG ] No samples found: skewer [2021-01-28 00:37:57,526] multiqc [DEBUG ] No samples found: sortmerna [2021-01-28 00:37:57,530] multiqc [DEBUG ] No samples found: biobloomtools [2021-01-28 00:37:57,534] multiqc [DEBUG ] No samples found: fastq_screen [2021-01-28 00:37:57,538] multiqc [DEBUG ] No samples found: afterqc [2021-01-28 00:37:57,541] multiqc [DEBUG ] No samples found: fastp [2021-01-28 00:37:57,625] multiqc.modules.fastqc.fastqc [INFO ] Found 3 reports [2021-01-28 00:37:57,667] multiqc [DEBUG ] No samples found: pycoqc [2021-01-28 00:37:57,671] multiqc [DEBUG ] No samples found: minionqc [2021-01-28 00:37:57,675] multiqc [DEBUG ] No samples found: multivcfanalyzer [2021-01-28 00:37:57,679] multiqc [DEBUG ] No samples found: clusterflow [2021-01-28 00:37:57,683] multiqc [DEBUG ] No samples found: bcl2fastq [2021-01-28 00:37:57,687] multiqc [DEBUG ] No samples found: interop [2021-01-28 00:37:57,691] multiqc [DEBUG ] No samples found: ivar [2021-01-28 00:37:57,695] multiqc [DEBUG ] No samples found: flash [2021-01-28 00:37:57,699] multiqc [DEBUG ] No samples found: seqyclean [2021-01-28 00:37:57,699] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found. [2021-01-28 00:37:57,699] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2021-01-28 00:37:57,699] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2021-01-28 00:37:57,703] multiqc [INFO ] Compressing plot data [2021-01-28 00:37:57,756] multiqc [INFO ] Report : multiqc_report.html [2021-01-28 00:37:57,760] multiqc [INFO ] Data : multiqc_data [2021-01-28 00:37:57,760] multiqc [DEBUG ] Moving data file from '/state/partition1/job-1820352/tmpnj_yizer/multiqc_data' to '/scratch/gencore/logs/html/HWGC5DRXX/merged/multiqc_data' [2021-01-28 00:37:57,885] multiqc [INFO ] MultiQC complete