HWCMHBGX5_n01_3.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HWCMHBGX5_n01_3.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	16686660
Sequences flagged as poor quality	0
Sequence length	76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTG	21772	0.13047548161225794	No Hit
GAACAATCCAACACTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCG	21276	0.12750304734440565	No Hit
CGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGTAAGACCATGTAT	18900	0.11326412835162937	No Hit
CGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACC	18386	0.11018382348534697	No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA	17997	0.10785261999705154	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGTCACG	2360	57.395103	28
CTCGTAT	2070	56.304184	44
TATGCCG	2100	55.666504	48
TCGTATG	2200	55.204388	45
GTCACGA	2595	52.19716	29
GTATGCC	2305	51.77859	47
CACGAGT	2665	51.088337	31
ATGCCGT	2510	46.01539	49
CACGTCT	3080	45.227276	14
TGGATAT	2990	44.598	37
GCCGTCT	2340	44.57212	51
ACGTCTG	3160	44.19304	15
ACACGTC	3280	42.789764	13
CTGAACT	3325	42.10451	19
TGCCGTC	2655	41.788578	50
GAACTCC	3425	40.670925	21
CGTATGC	3040	39.374886	46
TCACGAG	3590	38.90019	30
GTGGATA	3625	37.07564	36
GAGCACA	3975	35.220654	9