FastQCFastQC Report
Wed 27 Feb 2019
HWCLJBGX9_n01_190222-lib1c.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHWCLJBGX9_n01_190222-lib1c.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27551145
Sequences flagged as poor quality0
Sequence length26
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGAGCCG77800.017.7423861
GGGACCT66350.017.6534061
TGACGGC76200.017.6292381
GCGCGAT73400.017.5113471
TCTGGAA87700.017.4047361
GGCGACT70500.017.309451
CAATGGA70550.017.2916898
ACGAGGA92500.017.2477111
ATGCGAT64750.017.2090931
GACTGCG89100.017.1873931
CTGCGGA59650.017.1712551
ACTGAAC79650.017.1419181
CATGGCG71500.017.1233181
ATGGGAG87100.017.0997221
GGGAATG67700.016.9763341
TGCGGGT62150.016.9311751
GAATGAA70250.016.87271
CGGACTG59850.016.8297561
GATGAAA64600.016.8155021
AAATGCC89050.016.8039041
Produced by FastQC (version 0.11.5)