FastQCFastQC Report
Wed 27 Feb 2019
HWCLJBGX9_n01_190222-lib1b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHWCLJBGX9_n01_190222-lib1b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44798115
Sequences flagged as poor quality0
Sequence length26
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGACGGC118250.017.9411771
GCGCGAT117050.017.7918341
TGAGCCG126500.017.5855391
GGGACCT112250.017.5278821
ATGGGAG143050.017.452921
TCTGGAA144950.017.438071
CAATGGA114050.017.421078
ACGAGGA149450.017.3547361
ACTGAAC121250.017.348781
CGGACTG95450.017.332891
AGCTTGA125500.017.3032441
GGCGACT113600.017.1963121
GACTGCG139800.017.085931
GAATGAA114700.017.083721
TGCGAGG80650.017.0114544
CGCTGGA112600.016.9315191
TACGGGC132500.016.911
GGGAATG111750.016.8723371
ATGCGAT105950.016.8613341
CACCGAA88500.016.8463828
Produced by FastQC (version 0.11.5)