FastQCFastQC Report
Tue 31 Oct 2017
HWCGKBGX3_n01_ap_48.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHWCGKBGX3_n01_ap_48.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34720
Sequences flagged as poor quality0
Sequence length75
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGGGAG150.002336296369.0000159
TCCAGTC200.00729935951.75000414
CGGATGT200.00729935951.7500043
GCAGCTC200.00729935951.7500043
Produced by FastQC (version 0.11.2)