FastQCFastQC Report
Tue 19 Nov 2019
HWC7VAFXY_n01_AH7797-Myc.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHWC7VAFXY_n01_AH7797-Myc.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8263824
Sequences flagged as poor quality0
Sequence length51
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCACACG41150.037.9446311
GATCGGA41200.037.52541
CACACGT42500.036.791612
ACGTCTG42950.036.66803715
GTCACAC42750.036.3170429
CACGTCT43500.036.2561414
ACACGTC43550.036.0595313
CGTCTGA44850.034.91399816
CAGTCAC45300.034.4217227
AGCACAC46500.033.7241110
TCCAGTC46500.033.62876525
GAGCACA46750.033.4475179
CCAGTCA47800.032.71457326
AGAGCAC48550.032.253988
AGTCACA48050.032.2175528
TCGGAAG49000.032.003883
ACTCCAG50450.031.13165723
GAACTCC52700.030.01599121
TCACACT52350.030.00139430
GTCTGAA52950.029.61912217
Produced by FastQC (version 0.11.5)