HWC7VAFXY_n01_AH5187-rep2-i3h-spike.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HWC7VAFXY_n01_AH5187-rep2-i3h-spike.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5678605
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCCGATCTCGTATG	109963	1.9364438977530571	TruSeq Adapter, Index 16 (97% over 40bp)

Adapter graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCACACG	13795	43.431316	11
GTCCCGA	13080	43.276928	36
CGTCCCG	13440	43.27278	35
GATCGGA	14020	42.889687	1
ACCCGTC	13675	42.81337	32
CCCGTCC	13685	42.748444	33
TCACCCG	13800	42.623478	30
ACACGTC	14100	42.602417	13
CGTCTGA	14060	42.5796	16
CACACGT	14100	42.538593	12
CACGTCT	14085	42.50403	14
ACGTCTG	14060	42.499596	15
CCCGATC	12220	42.4927	38
CACCCGT	13900	42.268265	31
CCGTCCC	13820	42.18173	34
AGCACAC	14270	42.159065	10
GAGCACA	14350	42.018105	9
GTCACCC	14060	41.946934	29
TCCCGAT	13120	41.909943	37
TCGGAAG	14590	41.65295	3