FastQCFastQC Report
Thu 21 Nov 2019
HW7KNAFXY_n02_hr38s93.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHW7KNAFXY_n02_hr38s93.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences128
Sequences flagged as poor quality0
Sequence length76
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21.5625No Hit
GATGAGCACACGTGTCCCTGCTGAGAGCGGGAGAGCACTGGGGGCCGTGG10.78125No Hit
TCCCCGGACAGATCGGAAGAGCCCACGTCTCCCCGGACAGATCGGAAGAG10.78125Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
CCGGGGTGTGGTGGGGAGCGGCCTGGTCTGGCTGCGGAGGGCGGCGGTGG10.78125No Hit
CAGCTAAGAAGCACGCCACCAACCATAGTCGAAGGGGATTTTTAGCAGGT10.78125No Hit
CTGCCGGGGTGCCCAGGGGGGGGGGTGGGGGGCCGGGCGTCCCAGGGCGC10.78125No Hit
GTCATCAAGAGATCTATACCGGTGTAGTAGAGAGCTATTCGGGTCGAGTA10.78125No Hit
CTTCCGATCTGAGTCGGTGTACTAGTTAAATATAGGAAAATGATGAGTAT10.78125No Hit
CTCCCTTGCTAGATCGGAAGAGCACACGTCTCCCTTGCTAGATCGGAAGA10.78125Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
AAAAAGCCGCTCCCTAATGAGAAGTTCGCGCACACTCGACAAAAAGTATA10.78125No Hit
GTGACCACCTGTCTTGAAGTTTGATACTTAGCTATGATCCACTTTTTATG10.78125No Hit
GCTTTCTCCGATCGTCATTCCCCGATGCACAATTGCGCATCTGAGGGCGC10.78125No Hit
GTTCACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAATCTCATATG10.78125No Hit
GATTTGGGAGACGTGTGCTCTTCCGATCTGATTTGGGAGACGTGTGCTCT10.78125Illumina Multiplexing PCR Primer 2.01 (100% over 21bp)
GGTCGTCGCACTACCCGATAGTCGAGGCCCGCGATGACCGCACCAAGCCG10.78125No Hit
CTTCCGATCTGGTGCGGAGACGTGTGCTCTTCCGATCTGGTGCGGAGACG10.78125Illumina Multiplexing PCR Primer 2.01 (100% over 21bp)
GCACAGTGCCAACCCCGTCGGCTGCCCGAAATCGCCCTTCGCGCGCGCGC10.78125No Hit
CTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTAAGGCCCCCC10.78125No Hit
GTGCTCTTCCGAGACGTGTGCTCTTCCGAGACGTGTGCTCTTCCGAGACG10.78125No Hit
CTTCCGATCTCGCGCGGGAGACGTGTGCTCTTCCGATCTGCTGAGGGAGA10.78125Illumina Multiplexing PCR Primer 2.01 (95% over 22bp)
TCGTATCCTATGGAAACGTGTCGTTGACTTGAACGACCGTGCTCTTAGAC10.78125No Hit
GGGTAACCTGCATCTTCACAGGTACTATAATTTTCACCGAGTCTCTCGTT10.78125No Hit
GCGTAGTGTCGAGTCCTCCCAGCCTTCCTTGGGCAACGAAGCGCGGGCCA10.78125No Hit
GTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGA10.78125No Hit
GAGATAGCTTCGTGTCTTCGAACTCTGAGACAGGTGCTGCATGGCTGTCG10.78125No Hit
ATCCTATTGTGTGTGCTGGTTGAGCAAAGTCTCCAACTCGTCAAGCTTCT10.78125No Hit
CCCGAAGAACGGGGGGGCGCTGCGCCGGGCCGGGCCGCCGGGGGTTCGGG10.78125No Hit
TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTG10.78125No Hit
GTTCCGCGCTGCGGAGGGGGGCGCTTGCGATTTTAAAAAGAAAAAAAGCA10.78125No Hit
GACGTGTGCTCTTCCGATCTCGTGAGGGAGACGTGTGCTCTTCCGATCTC10.78125Illumina Multiplexing PCR Primer 2.01 (95% over 22bp)
CGTCTCGGAAGAGCACACGTCTCGGAAGAGCACACGTCTCGGAAGAGCAC10.78125No Hit
AGCGTGGCCTATCCATCCTTTTGACATTGATGGTTTCAAGCCTGTCTCTT10.78125No Hit
ATGCGCGCCAGGTCCTGGGTTTCCCGGAGCACCGACCTTAAGGCCCGGGC10.78125No Hit
GTGCTCTTCCGATCTCAATGGGGGCTCTTCCTGTCTCTTATACACATCTG10.78125No Hit
AAATTGGAAAGATTTTAAGGGCACACGCAGTATGCCTTAGCACCACGAAC10.78125No Hit
CGGGGTGCGGGGTGCGCGGGAGCTAGGATGGGGGGGACTTGTGCTACGAG10.78125No Hit
ACCCCTAAGGGTGGGTTTCCCGATTCGGACATTGCCGGATCAAAGCATAT10.78125No Hit
TCCCTGTGGAGATCGGAAGAGCACACGTCTCCCGGAGGAGATCGGAAGAG10.78125Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
GGCTTGGGAGACGTGTGCTCTTCCGATCTGGCTTGGGAGACGTGTGCAAA10.78125Illumina Multiplexing PCR Primer 2.01 (95% over 22bp)
CGAGAGACCAATGAAAATAAGATATAGAAAACTATAGAAAGAAATATCCA10.78125No Hit
TAATACGGCTCGTCACCGACCAGCACGATCAGCCGGTGCCCCTTGGCGCG10.78125No Hit
CATAAAACTGAAAACGTTACTGCTATCCTGAGGGAAACTTCGGCAGGAAC10.78125No Hit
CTTATGGGAGACGTGTGCTCTTCCGATCTCTGTGGGAGACTGTCTCTTAT10.78125Illumina Multiplexing PCR Primer 2.01 (95% over 22bp)
CGTCTCCCAGCAGAGATCGGAAGAGCACACGTCTCAACAGAGATCGGACT10.78125Illumina Multiplexing PCR Primer 2.01 (96% over 25bp)
CTTCCGATCTGTAACGGGATACGTGTGCTCTTCCGATCTGTAACGGTATA10.78125No Hit
GTCATGAGCTTGGTGCGAATACGATCGACCCCGCGTATCTAACATGCCGT10.78125No Hit
GGGAAATAATTGCAATTCCCGATCCCAATCACGTAGGATTTTGATGGGTT10.78125No Hit
CGTCTCCCTGTCGGGATCGGAAGAGCACACGTCTCCCTGTCGAGATCGGA10.78125Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGTGCGCACCCATGGGGGT10.78125No Hit
CTTCCGATCTATGAAGGGAAGAGCACACGTCTCCAGGTTAGATCGGAAGA10.78125No Hit
GTGCGGTTCGGCGCTGGGCGGGGTGTGGTGTGGGGTTCGGAGCGGGGGGG10.78125No Hit
CTCTCGAGGGAGACGTGTGCTCTTCCGATCTCTCGAGGGAGACGTGTGCT10.78125Illumina Multiplexing PCR Primer 2.01 (100% over 21bp)
CACGTCTCCCCAGACAGATCGGAAGAGCACACGTCTCCCCAGACAGATCG10.78125Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
GGGTAGCGATCGGAAGCGCCAAAAAAAAAAAAAAAAAAAAGATAAACGGG10.78125No Hit
CTCCCAGACCAGATCGGAAGGGCACACGTCTCCCGACATAGATCGGAAGA10.78125Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
GTTCCGATCTGTCCAGGGAGGCGTGTGGTGTTCGGATCTGTGCAGGGAGG10.78125No Hit
GCCGAAGTACTGGCGACCTGGGACGAGTATGTCGAGCCGATGATCCAGCT10.78125No Hit
TCCCTAGTCAGATCGGAAGAGCACACGTCTCCCAGATTCTGTCTCTTATA10.78125Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
CTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTAAGGCC10.78125No Hit
CTATTACGCTTTCTTTAAAGGATGGCGCTTCTAAGCCAACCTCCTAGCTG10.78125No Hit
AACTAGACGTGTGCTCTTCCGATAAAGGCGGTTTTACTAAACATAATCAC10.78125No Hit
AATCAAAACCGATTTTCTCAGCTATACCAAAATCAGCTATAAAGAGCCTC10.78125No Hit
CTCCATAATTAGATAGGAACAGCAAACGACACCATAATTATAAACTAAGA10.78125No Hit
CTTCCGATCTAAGGGGGGGTGCTCTTCCGAAAAAAAAAAAAAAAAAAAAA10.78125No Hit
GTTTTATGTAGCAAGCAGCTCAGTTGGCAGTTTTCTCTGTGCCTCTGCTA10.78125No Hit
GCGTATCTGCGCGTGGTGCAGGAGCGCTTCGGCTCGCGCGGGTTGCTCGG10.78125No Hit
TCCGAGACGTGTGCTCTTCCGAGACGTGTGCTCTTACGAGACGTGTGCTC10.78125No Hit
TCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAAGCACC10.78125No Hit
AGGGGGAGCTGGTATGGGATACGAGCGCGGTTTAGTGGGGCTCATGTTGA10.78125No Hit
ACCCGTCTCCCTGCCCAGGTCGGAAGAGCCCCCGGCGCCCTGCGCCGGTC10.78125No Hit
GTGTAGTGCGATCGGTGGATGCCTTGGCACCAAGAGCCGATGAAGGACGT10.78125No Hit
GCACTCTAGCAAGACTGCCGGTGATAAACCGGAGGACTGTCTCTTATACA10.78125No Hit
GTGATCCTATGCTGCCGAGAAAAGCCTCTAGTGAGTTCTTATGCGGCCCG10.78125No Hit
ATGACGTCAAGGACGACTGCCGTGACGGCGAGGACTGCGGAATTCATCGC10.78125No Hit
GCCGAGGAGACGTGTGCTCTTCCGATCTGCCGAGGAGACGTGTGCTCTTC10.78125Illumina Multiplexing PCR Primer 2.01 (95% over 22bp)
GTATAGGGGTGCTCTTCCGAAAATAAAAAAAAAAAAACAATAAGTGGGGG10.78125No Hit
CTCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCA10.78125No Hit
GTGCTGTTCCGGTGTGGTGGGGGAGGCGTGTGGTGGGGGGCTCTGCAGGG10.78125No Hit
CTTCCGATCTAATACGGAGACGTGTGCTCTTCCGATCTGAGCAGGGAGAG10.78125Illumina Multiplexing PCR Primer 2.01 (95% over 22bp)
CCGCTGGAGATCGGAAGAGCACGCGTCTCCCGCTGGAGCTGTCTCTGATA10.78125Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
GGGGGGGGGTGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGG10.78125No Hit
TCCCTATCGAGATCGGAAGAGCACACGTCTCCCTATCGAGATCGGAAGAG10.78125Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
GCTATTACCCGCTTTCGCTCTGGTCCTGGCAGGACGCGATCAAGGCGGTG10.78125No Hit
ATCTAAGCCAGCCGGAGGCGAATGCCGGGCCAGATGCCACGCCCCAGCAG10.78125No Hit
CTAAAAAACATCAAGCAAAAACAACGAATCTAAAAATTAGCAACAAAAAA10.78125No Hit
GAGCGCACGTCGCAAACGTCCGATAGGAAGAGGGGACGTCTCCCGCGGCA10.78125No Hit
CCACACGTCTACCTATAAAGCTAGGAAGACCACACGTCTACCTGTTTAGA10.78125No Hit
GCGGCGCCCCGCCCAAGGGCCTACGACGGGCGGTGTGGGTGGGAGAAGGG10.78125No Hit
CTTCCGAGACGTGTGCTCTTCCGAGACGTGTGCTCTTCCGAGACGTGTGC10.78125No Hit
CAGACGTATATAACAATTTATATCGTAAAATGTCCAAAAAGGACAGGCTG10.78125No Hit
GAGCACTTAAGATCTGCCCTGCGAGACGTGTGATAATCAGAACATAACAA10.78125No Hit
GACCAGATCGGCCCGACAAGATGTTCCTGTTCGCGTCCGACTATCCGCAT10.78125No Hit
GACGTGTGCTCTTCCGATCTGCCCCGGAGACGTGTGCTCTTCCGATCTGA10.78125Illumina Multiplexing PCR Primer 2.01 (100% over 21bp)
CTCCGGGTCAGATCGGAAGAGCACACCTCTCCCGGTCACATAGGAAGAGC10.78125Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
CTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAATCACAAAACG10.78125No Hit
GTAAAAACACAGGGCTCTGCGAAATCGAGAGATGACGTATAGGGTCTGAC10.78125No Hit
GAGGTAACATCATGAAAAAGCTACTGATTGCCCTCATGACTTCGGCTGCG10.78125No Hit
CCGCTTAGTATATCGTAACCGCAAAGATATACATCACAATAGCACACCAC10.78125No Hit
GATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAGGCGATTTTACTG10.78125No Hit
ATCTGGGACGGGCTAGGGAAAAAAAAACCCCCAAAAAAAAAAAAAAAAAA10.78125No Hit
AATCCGATCTAAGAAGGGAGCGGTGACCAAATGAGAACGAAGTACGGATA10.78125No Hit
CGATAGCCGAACCGCACTCCAAAGCCCTACGGAACCACAGAGGACATCAT10.78125No Hit
TCTCCCTTTACAGATCGGAAGAGCACACGTCTCCCTAATAAGATCGGAAG10.78125Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
CTCCAATGGGAGACGTGTGCTCTTCCGATCTCCAAAGGGAGACGTGTGCT10.78125Illumina Multiplexing PCR Primer 2.01 (95% over 22bp)
CAGCAGGGAGACGTATGCTCTTCCAAAAAAAAAAAAAAAAAAAAAAAAAA10.78125No Hit
GTTCTTATCAATATGTGAAAGTTGTGCCTCAATCCAATTATCTTGGAACA10.78125No Hit
TAGTTGTTACGGGATTGGTGGGTGAGCGGTTGGTGACCAGGATTCACGTC10.78125No Hit
CGTCTCCCAACAGAGATCGGAAGAGCACACGTCTCCCAACAGCTGTCTCT10.78125Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
CCATTGAAGCAGCCCAATTGAACGGTATATGCGTCCAAGTCTCATATCTA10.78125No Hit
CGCCCGTGCCGACGAGACGCTGCGGACGATCCGCACTCAACACCACGAGC10.78125No Hit
AAGGTACGCTCCCTTTGGTGAAGCATTTACTGCGTAAGCTGAGGGGAGTC10.78125No Hit
TATTAGGGCGAAATCGCCGGGGCGCCGGGGCGCGACGTGCACGTTTCCGG10.78125No Hit
CACGTCTAGATCGGAAGAGCACACGTCTAGATCGGAAGAGCACACGTCTA10.78125Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
ATAAACAACCAGCCACACGAACATAGGAATGACAAGCCAAGACAAGCAAA10.78125No Hit
GTGATATGACGAACGAACAAGGGAGGCCTGTGTTGGGACGATCGTACAAG10.78125No Hit
GAGCACACGTCTCCCCACAAAGATCGGAAGAGCACACGTCTCCCCGTGCC10.78125Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
ATTCCGATCTGGCATGGGGGAGCCCAGAGCCACAGCACACTCCCGGGGGA10.78125No Hit
AGCCAGGGGCGAATCGATCGCCCAGAGTACGTATGGCCTGTTGCGCGCCC10.78125No Hit
GCACACGTCTAGAGATCGGAAGAGCACACGTCTCCCTGTTAAGATCCTGT10.78125Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
CCGGCGGCGGCGCGGCCGGGTCGCGGGCGGCCGCGGGCCGCGTGGCGCCG10.78125No Hit
ATAGGGGGACGTGTGCTGTTGGGGTGGCCTATGGGGTGTCTGTGTTTCTC10.78125No Hit
GACGTGTGCTCTTCCGATCTGCAGTGGGAGACGTGTGCTCTTCCGATCTG10.78125Illumina Multiplexing PCR Primer 2.01 (100% over 21bp)
GATTGGGCTGTTGCGCTTGGCTGACGCTGGCACATGGCGAGGGGCTGCTG10.78125No Hit
AAACGGTCGACGCCGCGGGCGACGAGCACGAATGCAATGATGTTGAAGGC10.78125No Hit
GATTAATGTAGCAACCAGCTCAGTGGGCAGGGGTCTCGGGGCCGCGGCGA10.78125No Hit
TGTGGGAGACGGGTGCGCTTGCGGTCGGGTGTGGGAGGGGGGGGCTCGTG10.78125No Hit
GAAAGACACCTAGCTGGTGTCCACTGCAGAACTGATTTCTTGCTTAGTGG10.78125No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers