FastQCFastQC Report
Sun 30 Jun 2024
HW7G5DMXY_n01_NYUEB_HiC_AS02_S2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHW7G5DMXY_n01_NYUEB_HiC_AS02_S2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences894430557
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCAAGTCTATCTCGTAT11460220.12812867259855926TruSeq Adapter, Index 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)