FastQCFastQC Report
Fri 8 Nov 2019
HW7CJAFXY_n02_undetermined.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHW7CJAFXY_n02_undetermined.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18038705
Sequences flagged as poor quality0
Sequence length76
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN2083351.1549332393871954No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1240580.687732295638739No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA5357.2759576E-1212.431252547
CCGTATC7009.094947E-1210.50116649
GCCGTAT6704.3655746E-1110.44895148
TCGCCGT9706.8030204E-107.938712646
CTCGGTG8906.2230356E-77.06939338
CGTATCA9957.221388E-87.036215350
GTTCGGC6005.944808E-47.000974714
GATCTCG12507.129056E-75.87606535
TCGGTGG11051.2882038E-45.378208639
AGCGGTT8500.0048927325.353279610
Produced by FastQC (version 0.11.5)