FastQCFastQC Report
Fri 8 Nov 2019
HW7CJAFXY_n02_SG163_col_B_l2-c.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHW7CJAFXY_n02_SG163_col_B_l2-c.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8
Sequences flagged as poor quality0
Sequence length76
%GC34

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGAGAGACCTCCGTAAAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTG112.5Illumina Single End PCR Primer 1 (100% over 32bp)
TAGTATAAAATTAAAATAATGAAATTAACTAGTATTTGGTAAATAAAAGA112.5No Hit
GAATAAACTATATTAGTAAAGGATCCCCTATTAGTAAATAACCTCATTCT112.5No Hit
AATTGTTTTTTCATATTTAACGTTTGTGTTAATATAAAAAATTGTTTTAA112.5No Hit
AAAACAAGAAACAGAGAGCTAGTAACGATAGAGAGAACGAAACAAACGAT112.5No Hit
CCCCTCAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTAAGATTAGTG112.5Illumina Single End PCR Primer 1 (96% over 33bp)
TCGGAGAGACTCTCACTAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT112.5Illumina Single End PCR Primer 1 (100% over 33bp)
ATGTTTTGTGATCGAATCTCTTAAAATACATAAATAAAGATTTTAGTATG112.5No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)