FastQCFastQC Report
Fri 8 Nov 2019
HW7CJAFXY_n02_SG162_col_B_l1-c.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHW7CJAFXY_n02_SG162_col_B_l1-c.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1808500
Sequences flagged as poor quality0
Sequence length76
%GC31

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20170.11152889134641969No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGACTG1300.002285566416.1600996
GGACTGT2750.00253811910.1851957
AGTTGGC3700.00301801098.51398148
GTTCCAT8950.0089582135.082953518
Produced by FastQC (version 0.11.5)