FastQCFastQC Report
Fri 8 Nov 2019
HW7CJAFXY_n02_MYC2_col_B_l-c.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHW7CJAFXY_n02_MYC2_col_B_l-c.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7575866
Sequences flagged as poor quality0
Sequence length76
%GC35

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG116180.15335540517744112No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC5650.013.62958856
CGCCGTA6150.013.09047859
GCCGTAT7251.8189894E-1110.13860860
TGGTCGC8353.6379788E-129.6416855
CCGTATC9756.2700565E-97.538864661
GGGTGTA15700.07.35742270
AGGGTGT19450.06.658717669
TAGGGTG19100.06.597386468
TCGGTGG13903.3469405E-96.295009651
GGATAGG26800.06.26928270
CTCGGTG11408.5022657E-76.14047650
GTCGCCG11651.2514884E-66.00914357
GGTGGTC15405.158654E-95.909211653
GTGGTCG17251.9626896E-95.681313554
TCGCCGT13151.7977272E-65.589652558
GATAGGG25450.05.50153170
AGGATAG35550.05.415448770
ATAGGGT27551.8189894E-125.082176770
GTAGGAT44000.05.011830369
Produced by FastQC (version 0.11.5)