FastQCFastQC Report
Fri 8 Nov 2019
HW7CJAFXY_n02_LBD10_col_B_l-c.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHW7CJAFXY_n02_LBD10_col_B_l-c.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2147257
Sequences flagged as poor quality0
Sequence length76
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27950.1301660676854238No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAACGCG2050.003349634111.950459519
AGGCTAT9756.2482286E-97.539035370
TGTAGGC9906.5723725E-87.07124670
TAGGCTA10005.849852E-76.65050769
GCTATAG7904.2701693E-56.646076769
GTAGGCT9501.7831171E-66.6319368
GGCTATA9501.258842E-56.263489268
AGTGTAG15556.4028427E-95.852399368
CTATAGT10956.398579E-45.11454570
Produced by FastQC (version 0.11.5)