FastQCFastQC Report
Fri 8 Nov 2019
HW7CJAFXY_n02_HB26_col_B_l-c.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHW7CJAFXY_n02_HB26_col_B_l-c.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2361103
Sequences flagged as poor quality0
Sequence length76
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32740.13866400576340804No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCACG2250.00670575910.88853646
GGTGGTC4850.00418968137.21656753
TGGGGGG5200.0082315066.731121555
AGGCTAT9309.055584E-66.3983269
TGTAGGC9601.4810235E-56.197978566
TAGGCTA10306.6797274E-66.116955368
AAGAGTG20300.06.034926470
GGCTATA10509.121601E-66.000441670
GTAGGCT9002.565141E-45.83376267
TGGTGCT7300.00541887535.752750443
GGGAAAG21951.6370905E-105.26201266
GATCGAA9600.00362531725.10454270
GTAGGGA20101.43390935E-85.049587763
Produced by FastQC (version 0.11.5)