FastQCFastQC Report
Fri 8 Nov 2019
HW7CJAFXY_n02_DUO3_col_B_l-c.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHW7CJAFXY_n02_DUO3_col_B_l-c.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2019586
Sequences flagged as poor quality0
Sequence length76
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25870.12809556017916543No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGGTA3000.00522874069.33268612
CTGCACC3150.00781034178.88783242
CATCCGA4450.00179513687.8687167
AGTGTAG12604.9112714E-117.222973370
GCTATAG7953.318322E-46.163552366
TAGGCTA9356.6891065E-55.9897869
TGTAGGC8952.3769263E-45.86638767
GTAGGCT8700.00105058795.632630368
AGGCTAT8800.00733365545.170992470
Produced by FastQC (version 0.11.5)