FastQCFastQC Report
Fri 8 Nov 2019
HW7CJAFXY_n02_DAZ3_col_B_L.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHW7CJAFXY_n02_DAZ3_col_B_L.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7593846
Sequences flagged as poor quality0
Sequence length76
%GC35

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG116700.15367706956396007No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC5300.013.86895456
CGCCGTA6200.013.548559
TGGTCGC7450.012.21591355
GCCGTAT8454.0017767E-119.11238160
CCGTATC10550.08.625607561
TAGGGTG18400.07.03861270
AGGGTGT19800.06.89449670
GGGTGTA16301.8189894E-126.6569870
CTCGGTG10803.2104253E-76.48196250
TCGGTGG13651.4983016E-86.15418151
GTCGCCG12355.613547E-75.951740757
GGTGGTC14253.730929E-85.89490253
CGTATCA16301.8730134E-85.582427562
GATAGGG27250.05.523381770
GGATAGG28500.05.281128469
ATAGGGT28200.05.089063669
Produced by FastQC (version 0.11.5)