Basic Statistics
Measure | Value |
---|---|
Filename | HW7CJAFXY_n02_DAZ1_col_B_l-c.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 13667858 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | 19657 | 0.1438191704947476 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCCGTA | 1540 | 0.0 | 12.273594 | 59 |
TGGTCGC | 1935 | 0.0 | 10.130322 | 55 |
GCCGTAT | 2010 | 0.0 | 10.100031 | 60 |
GGTCGCC | 2030 | 0.0 | 9.828675 | 56 |
CCGTATC | 2375 | 0.0 | 8.105509 | 61 |
TGGGGGG | 4840 | 0.0 | 7.738348 | 57 |
CGTATCA | 2950 | 0.0 | 6.9998026 | 62 |
TCGCCGT | 2820 | 0.0 | 6.950617 | 58 |
TCGGTGG | 2925 | 0.0 | 6.820795 | 51 |
GGCTATA | 9410 | 0.0 | 6.8073683 | 70 |
AGGCTAT | 9835 | 0.0 | 6.6911573 | 70 |
TAGGCTA | 11110 | 0.0 | 6.4903917 | 70 |
TGTAGGC | 12625 | 0.0 | 6.487872 | 70 |
CTATAGT | 8600 | 0.0 | 6.3088617 | 70 |
GCTATAG | 9035 | 0.0 | 6.160108 | 69 |
GTAGGCT | 11985 | 0.0 | 6.0457706 | 69 |
GTCGCCG | 3265 | 0.0 | 6.00364 | 57 |
AGTGTAG | 19815 | 0.0 | 5.953243 | 70 |
GAGTGTA | 18355 | 0.0 | 5.3778973 | 70 |
TATAGTG | 7775 | 0.0 | 5.1774416 | 70 |