FastQCFastQC Report
Fri 8 Nov 2019
HW7CJAFXY_n02_C24SPL16_col_B_l-c.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHW7CJAFXY_n02_C24SPL16_col_B_l-c.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences268953
Sequences flagged as poor quality0
Sequence length76
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3180.11823627176495521No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCGCGG200.006947370252.4979149
ACCGCAG400.002416622134.99860448
CGTCATG400.002416622134.99860423
CGCGAAC400.00241882834.992154
AGGAGGG450.00429566131.1214474
CACTCGT450.00430740831.10408819
TACACTC750.001829822423.33240317
CAAGGGT900.005273446419.44005451
CTACACT1250.001758328216.79933216
TTTAGAC1450.00471697314.48756967
Produced by FastQC (version 0.11.5)