FastQCFastQC Report
Fri 8 Nov 2019
HW7CJAFXY_n02_C24SPL16_col_B_L.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHW7CJAFXY_n02_C24SPL16_col_B_L.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1784195
Sequences flagged as poor quality0
Sequence length76
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24670.13826963980954995No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGTGT2550.001356426610.98142670
AGCCGTG3551.895139E-49.86008469
GGCGTTT2900.0039494429.655539552
AGAGCCG5700.00266055466.75502267
AACAGAC5950.00418544846.46920134
CAGAGCC6700.00207430366.26924766
GTTCAGA10254.037333E-55.805424770
TGTTCAG11151.4429286E-45.336825469
AGTGTTC11502.29161E-45.174400369
GTGTTCA10956.39421E-45.11463768
Produced by FastQC (version 0.11.5)