FastQCFastQC Report
Fri 8 Nov 2019
HW7CJAFXY_n02_C24SPL14_col_B_l-c.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHW7CJAFXY_n02_C24SPL14_col_B_l-c.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences364782
Sequences flagged as poor quality0
Sequence length76
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5580.15296807408260277No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACGCTC450.00430183231.11525752
CCAGGGG604.9778103E-429.16655211
GGTCCAC500.007204149427.99989155
ACCAGGG851.3066601E-424.70578410
CAGGGGT750.001830682523.33324212
CCGTAAT900.005274391319.44170241
ACAGTTA1000.00967063217.5023338
TCTCTCG1550.007355235513.55019349
GGTCCGA2350.00924177310.42406134
CTAAGTA4451.8792594E-48.65283869
TAAGTAG4653.022782E-48.28067370
CCTAAGT4150.00843217.59137468
GCCTAAG4200.0093836127.50167
Produced by FastQC (version 0.11.5)