FastQCFastQC Report
Fri 8 Nov 2019
HW7CJAFXY_n02_C24SPL11_col_B_l-c.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHW7CJAFXY_n02_C24SPL11_col_B_l-c.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1217454
Sequences flagged as poor quality0
Sequence length76
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG17880.14686386508237684No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC1350.002944721115.55715456
CCTAGCA1600.00910264313.12365245
TAGTGCA2200.005658080311.13933856
CGCCTGT3259.253521E-49.69370270
CCTGTGT4159.0258877E-48.43494869
CTGTGTA3750.00340305188.40120870
TCGCCTG3950.00543474647.975830669
AGTGTCT11051.5279511E-107.602590668
GTCTTCG8151.1421325E-67.301663470
GAGTGTC10704.9094524E-97.197000567
TTCGCCT5150.00748528546.797094369
TGTAGAT7250.0050125485.79274643
AGAGTGT13703.7908449E-65.365514866
GGATTTA9400.00278954045.212230719
GGGAAAG17801.3226963E-75.11288568
GTAGGGA18152.033612E-75.014289465
Produced by FastQC (version 0.11.5)