FastQCFastQC Report
Fri 8 Nov 2019
HW7CJAFXY_n01_COLSPL11_col_B_L.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHW7CJAFXY_n01_COLSPL11_col_B_L.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences269969
Sequences flagged as poor quality0
Sequence length76
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCTCGA200.006947396352.49791754
CCTGGAC200.006947396352.49791734
TAGTCGG350.001254307739.99841310
GTCACTG450.00430351631.10987737
CTGTCGA500.007169636428.0248431
CTACGTA500.0071891328.0092643
TCACTCG657.945325E-426.92200925
GCACTTT1052.0337688E-523.33240738
GCTGCAT850.003784235620.5874212
TCGTCGT900.00526782719.44367234
GGTGAGT950.007198321618.42032245
GTGTTAT1300.002279657916.1591916
TTGATAC1450.004728702414.48218357
Produced by FastQC (version 0.11.5)