HW7CJAFXY_n01_C24SPL16_col_B_l-c.fastq.gz FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	HW7CJAFXY_n01_C24SPL16_col_B_l-c.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	268953
Sequences flagged as poor quality	0
Sequence length	76
%GC	36

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATGGGG	25	2.3883606E-4	55.997025	21
CACGACT	20	0.0069477363	52.497215	29
AATGCGC	20	0.0069477363	52.497215	50
GGGCAGC	35	0.0012543822	39.997875	21
GGACGTT	45	9.185984E-5	38.88682	65
GTCTTCG	45	9.185984E-5	38.88682	36
GGGGCTG	40	0.0024167802	34.998142	24
GCCGGAT	45	0.0043037706	31.109459	35
AGGGGCT	45	0.0043037706	31.109459	70
AACGCTC	60	4.959584E-4	29.181393	3
ACCTCCC	60	4.975814E-4	29.165117	62
GAATGCG	50	0.007202573	27.998512	49
GGCAACA	95	0.007198811	18.420074	70
GGCAGCA	100	0.009674614	17.49907	22
CTCATGC	100	0.009674614	17.49907	51
GAGTTGC	100	0.009674614	17.49907	33
TATCCTG	100	0.009674614	17.49907	30
AATTCAA	350	0.0018141529	8.999522	59
AAAACAA	920	0.002106971	5.325804	12