FastQCFastQC Report
Fri 8 Nov 2019
HW7CJAFXY_n01_C24SPL15m2_col_B_L.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHW7CJAFXY_n01_C24SPL15m2_col_B_L.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1817022
Sequences flagged as poor quality0
Sequence length76
%GC31

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG1859.04285E-515.13436748
AGGGGGG1450.004716965414.493991
TGCCGTC1951.4156723E-414.35824750
GCCGTCT2052.1643663E-413.65784551
ATGCCGT2651.4064902E-411.8861949
GTATGCC2408.177182E-411.66607547
GCTCGAT2100.00401013411.66607549
CGTATGC2650.001871515410.56550246
ATCGGTA2700.002176830510.3752693
GAGTGTC2850.0034231149.82406366
CCGTCTT3000.0052275149.3328652
TATCTCG4451.8939367E-48.65124641
GTCACGA6301.7534439E-68.33291129
CTCGTAT4300.00128615768.13912244
CGTATCT3900.0048574618.07651339
TCTCGTA4905.3490506E-47.856744343
TAGGACA4900.00460765057.1462313
TCGTATC5000.0056356416.999644838
CAGTCAC7401.3106724E-46.621285427
CTCCAGT6450.00135334466.511297724
Produced by FastQC (version 0.11.5)