FastQCFastQC Report
Fri 8 Nov 2019
HW7CJAFXY_n01_Al_SPL9_col_B_l1-c.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHW7CJAFXY_n01_Al_SPL9_col_B_l1-c.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences858284
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG1202.1693195E-623.33154948
ATGCCGT1451.1173679E-519.30886749
TGCCGTC1200.00134138117.49866150
GTATGCC1951.4146075E-414.35787547
CCACACT2250.0067020910.88805521
CGTATGC2800.00295443379.99923446
TCCCGCC3400.0013887219.27209952
TTTCAGC4703.4138118E-48.19086328
Produced by FastQC (version 0.11.5)