[2024-10-09 21:55:07,716] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2024-10-09 21:55:07,716] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2024-10-09 21:55:07,716] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-10-09 21:55:07,718] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml [2024-10-09 21:55:07,718] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2024-10-09 21:55:07,718] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-10-09 21:55:07,755] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2024-10-09 21:55:07,755] multiqc [INFO ] This is MultiQC v1.9 [2024-10-09 21:55:07,755] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-10-09 21:55:07,755] multiqc [DEBUG ] Working dir : /scratch/gencore/GENEFLOW/work/nf/bf/f923640f4f346832545789df0cbbcc/merged [2024-10-09 21:55:07,755] multiqc [INFO ] Template : default [2024-10-09 21:55:07,755] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2024-10-09 21:55:07,755] multiqc [INFO ] Searching : /scratch/gencore/GENEFLOW/work/nf/bf/f923640f4f346832545789df0cbbcc/merged [2024-10-09 21:55:07,755] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2024-10-09 21:55:07,756] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-51981012/tmp9alv8sj3 [2024-10-09 21:55:07,865] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_S2_Hen1_clone1_Rep2_unox_7_fastqc.html [2024-10-09 21:55:07,868] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_S2_Hen1_clone1_Rep2_unox_7_fastqc.html [2024-10-09 21:55:07,923] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-10-09 21:55:07,925] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-10-09 21:55:08,029] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_S2_WT_clone3_Rep2_unox_12_fastqc.html [2024-10-09 21:55:08,031] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_S2_WT_clone3_Rep2_unox_12_fastqc.html [2024-10-09 21:55:08,087] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_35oligos_rep4_21_fastqc.html [2024-10-09 21:55:08,089] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_35oligos_rep4_21_fastqc.html [2024-10-09 21:55:08,148] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_35oligos_rep3_20_fastqc.html [2024-10-09 21:55:08,150] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_35oligos_rep3_20_fastqc.html [2024-10-09 21:55:08,210] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_35oligos_rep2_19_fastqc.html [2024-10-09 21:55:08,211] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_35oligos_rep2_19_fastqc.html [2024-10-09 21:55:08,270] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_129_4N_Rep3_unox_18_fastqc.html [2024-10-09 21:55:08,272] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_129_4N_Rep3_unox_18_fastqc.html [2024-10-09 21:55:08,327] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_B6_4N_Rep1_unox_13_fastqc.html [2024-10-09 21:55:08,329] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_B6_4N_Rep1_unox_13_fastqc.html [2024-10-09 21:55:08,386] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_S2_WT_clone1_Rep2_ox_4_fastqc.html [2024-10-09 21:55:08,388] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_S2_WT_clone1_Rep2_ox_4_fastqc.html [2024-10-09 21:55:08,450] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_FVB_4N_Rep1_unox_22_fastqc.html [2024-10-09 21:55:08,451] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_FVB_4N_Rep1_unox_22_fastqc.html [2024-10-09 21:55:08,506] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_S2_WT_clone1_Rep2_unox_10_fastqc.html [2024-10-09 21:55:08,508] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_S2_WT_clone1_Rep2_unox_10_fastqc.html [2024-10-09 21:55:08,565] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_S2_Hen1_clone3_Rep2_ox_3_fastqc.html [2024-10-09 21:55:08,567] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_S2_Hen1_clone3_Rep2_ox_3_fastqc.html [2024-10-09 21:55:08,630] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_S2_WT_clone2_Rep2_unox_11_fastqc.html [2024-10-09 21:55:08,632] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_S2_WT_clone2_Rep2_unox_11_fastqc.html [2024-10-09 21:55:08,688] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_S2_Hen1_clone1_Rep2_ox_1_fastqc.html [2024-10-09 21:55:08,690] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_S2_Hen1_clone1_Rep2_ox_1_fastqc.html [2024-10-09 21:55:08,754] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_FVB_4N_Rep2_unox_23_fastqc.html [2024-10-09 21:55:08,756] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_FVB_4N_Rep2_unox_23_fastqc.html [2024-10-09 21:55:08,811] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_FVB_4N_Rep3_unox_24_fastqc.html [2024-10-09 21:55:08,813] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_FVB_4N_Rep3_unox_24_fastqc.html [2024-10-09 21:55:08,868] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_S2_WT_clone2_Rep2_ox_5_fastqc.html [2024-10-09 21:55:08,870] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_S2_WT_clone2_Rep2_ox_5_fastqc.html [2024-10-09 21:55:08,934] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HW737BGXW_n01_undetermined_fastqc.html [2024-10-09 21:55:08,936] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HW737BGXW_n01_undetermined_fastqc.html [2024-10-09 21:55:08,980] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_S2_Hen1_clone2_Rep2_unox_8_fastqc.html [2024-10-09 21:55:08,982] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_S2_Hen1_clone2_Rep2_unox_8_fastqc.html [2024-10-09 21:55:09,036] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_S2_WT_clone3_Rep2_ox_6_fastqc.html [2024-10-09 21:55:09,037] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_S2_WT_clone3_Rep2_ox_6_fastqc.html [2024-10-09 21:55:09,100] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_B6_4N_Rep2_unox_14_fastqc.html [2024-10-09 21:55:09,102] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_B6_4N_Rep2_unox_14_fastqc.html [2024-10-09 21:55:09,157] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_S2_Hen1_clone3_Rep2_unox_9_fastqc.html [2024-10-09 21:55:09,159] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_S2_Hen1_clone3_Rep2_unox_9_fastqc.html [2024-10-09 21:55:09,212] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_129_4N_Rep2_unox_17_fastqc.html [2024-10-09 21:55:09,214] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_129_4N_Rep2_unox_17_fastqc.html [2024-10-09 21:55:09,269] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_129_4N_Rep1_unox_16_fastqc.html [2024-10-09 21:55:09,270] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_129_4N_Rep1_unox_16_fastqc.html [2024-10-09 21:55:09,326] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_S2_Hen1_clone2_Rep2_ox_2_fastqc.html [2024-10-09 21:55:09,327] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_S2_Hen1_clone2_Rep2_ox_2_fastqc.html [2024-10-09 21:55:09,391] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_B6_4N_Rep3_unox_15_fastqc.html [2024-10-09 21:55:09,393] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HW737BGXW_n01_SRS_B6_4N_Rep3_unox_15_fastqc.html [2024-10-09 21:55:09,738] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2024-10-09 21:55:09,739] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2024-10-09 21:55:09,758] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 25 samples (table) [2024-10-09 21:55:09,760] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2024-10-09 21:55:09,769] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2024-10-09 21:55:09,774] multiqc [DEBUG ] No samples found: conpair [2024-10-09 21:55:09,780] multiqc [DEBUG ] No samples found: peddy [2024-10-09 21:55:09,785] multiqc [DEBUG ] No samples found: somalier [2024-10-09 21:55:09,790] multiqc [DEBUG ] No samples found: methylQA [2024-10-09 21:55:09,799] multiqc [DEBUG ] No samples found: mosdepth [2024-10-09 21:55:09,803] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-10-09 21:55:09,807] multiqc [DEBUG ] No samples found: qualimap [2024-10-09 21:55:09,812] multiqc [DEBUG ] No samples found: preseq [2024-10-09 21:55:09,817] multiqc [DEBUG ] No samples found: quast [2024-10-09 21:55:09,822] multiqc [DEBUG ] No samples found: qorts [2024-10-09 21:55:09,827] multiqc [DEBUG ] No samples found: rna_seqc [2024-10-09 21:55:09,832] multiqc [DEBUG ] No samples found: rockhopper [2024-10-09 21:55:09,837] multiqc [DEBUG ] No samples found: rsem [2024-10-09 21:55:09,850] multiqc [DEBUG ] No samples found: rseqc [2024-10-09 21:55:09,854] multiqc [DEBUG ] No samples found: busco [2024-10-09 21:55:09,859] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-10-09 21:55:09,864] multiqc [DEBUG ] No samples found: disambiguate [2024-10-09 21:55:09,869] multiqc [DEBUG ] No samples found: supernova [2024-10-09 21:55:09,884] multiqc [DEBUG ] No samples found: deeptools [2024-10-09 21:55:09,890] multiqc [DEBUG ] No samples found: sargasso [2024-10-09 21:55:09,895] multiqc [DEBUG ] No samples found: verifybamid [2024-10-09 21:55:09,900] multiqc [DEBUG ] No samples found: mirtrace [2024-10-09 21:55:09,905] multiqc [DEBUG ] No samples found: happy [2024-10-09 21:55:09,910] multiqc [DEBUG ] No samples found: mirtop [2024-10-09 21:55:09,917] multiqc [DEBUG ] No samples found: homer [2024-10-09 21:55:09,921] multiqc [DEBUG ] No samples found: macs2 [2024-10-09 21:55:09,927] multiqc [DEBUG ] No samples found: theta2 [2024-10-09 21:55:09,932] multiqc [DEBUG ] No samples found: snpeff [2024-10-09 21:55:09,939] multiqc [DEBUG ] No samples found: gatk [2024-10-09 21:55:09,944] multiqc [DEBUG ] No samples found: htseq [2024-10-09 21:55:09,950] multiqc [DEBUG ] No samples found: bcftools [2024-10-09 21:55:09,955] multiqc [DEBUG ] No samples found: featureCounts [2024-10-09 21:55:09,962] multiqc [DEBUG ] No samples found: fgbio [2024-10-09 21:55:09,975] multiqc [DEBUG ] No samples found: dragen [2024-10-09 21:55:09,980] multiqc [DEBUG ] No samples found: dedup [2024-10-09 21:55:09,984] multiqc [DEBUG ] No samples found: damageprofiler [2024-10-09 21:55:10,011] multiqc [DEBUG ] No samples found: biobambam2 [2024-10-09 21:55:10,016] multiqc [DEBUG ] No samples found: mtnucratio [2024-10-09 21:55:10,018] multiqc [DEBUG ] No samples found: picard [2024-10-09 21:55:10,023] multiqc [DEBUG ] No samples found: prokka [2024-10-09 21:55:10,027] multiqc [DEBUG ] No samples found: samblaster [2024-10-09 21:55:10,036] multiqc [DEBUG ] No samples found: samtools [2024-10-09 21:55:10,041] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-10-09 21:55:10,047] multiqc [DEBUG ] No samples found: bamtools [2024-10-09 21:55:10,052] multiqc [DEBUG ] No samples found: jellyfish [2024-10-09 21:55:10,060] multiqc [DEBUG ] No samples found: vcftools [2024-10-09 21:55:10,065] multiqc [DEBUG ] No samples found: longranger [2024-10-09 21:55:10,070] multiqc [DEBUG ] No samples found: stacks [2024-10-09 21:55:10,075] multiqc [DEBUG ] No samples found: varscan2 [2024-10-09 21:55:10,093] multiqc [DEBUG ] No samples found: bbmap [2024-10-09 21:55:10,098] multiqc [DEBUG ] No samples found: bismark [2024-10-09 21:55:10,103] multiqc [DEBUG ] No samples found: biscuit [2024-10-09 21:55:10,108] multiqc [DEBUG ] No samples found: hicexplorer [2024-10-09 21:55:10,113] multiqc [DEBUG ] No samples found: hicup [2024-10-09 21:55:10,118] multiqc [DEBUG ] No samples found: hicpro [2024-10-09 21:55:10,123] multiqc [DEBUG ] No samples found: salmon [2024-10-09 21:55:10,128] multiqc [DEBUG ] No samples found: kallisto [2024-10-09 21:55:10,133] multiqc [DEBUG ] No samples found: slamdunk [2024-10-09 21:55:10,138] multiqc [DEBUG ] No samples found: star [2024-10-09 21:55:10,143] multiqc [DEBUG ] No samples found: hisat2 [2024-10-09 21:55:10,148] multiqc [DEBUG ] No samples found: tophat [2024-10-09 21:55:10,153] multiqc [DEBUG ] No samples found: bowtie2 [2024-10-09 21:55:10,158] multiqc [DEBUG ] No samples found: bowtie1 [2024-10-09 21:55:10,163] multiqc [DEBUG ] No samples found: snpsplit [2024-10-09 21:55:10,167] multiqc [DEBUG ] No samples found: kat [2024-10-09 21:55:10,171] multiqc [DEBUG ] No samples found: leehom [2024-10-09 21:55:10,177] multiqc [DEBUG ] No samples found: adapterRemoval [2024-10-09 21:55:10,181] multiqc [DEBUG ] No samples found: clipandmerge [2024-10-09 21:55:10,186] multiqc [DEBUG ] No samples found: cutadapt [2024-10-09 21:55:10,191] multiqc [DEBUG ] No samples found: flexbar [2024-10-09 21:55:10,195] multiqc [DEBUG ] No samples found: kaiju [2024-10-09 21:55:10,200] multiqc [DEBUG ] No samples found: kraken [2024-10-09 21:55:10,205] multiqc [DEBUG ] No samples found: malt [2024-10-09 21:55:10,210] multiqc [DEBUG ] No samples found: trimmomatic [2024-10-09 21:55:10,214] multiqc [DEBUG ] No samples found: sickle [2024-10-09 21:55:10,219] multiqc [DEBUG ] No samples found: skewer [2024-10-09 21:55:10,223] multiqc [DEBUG ] No samples found: sortmerna [2024-10-09 21:55:10,228] multiqc [DEBUG ] No samples found: biobloomtools [2024-10-09 21:55:10,232] multiqc [DEBUG ] No samples found: fastq_screen [2024-10-09 21:55:10,237] multiqc [DEBUG ] No samples found: afterqc [2024-10-09 21:55:10,242] multiqc [DEBUG ] No samples found: fastp [2024-10-09 21:55:11,970] multiqc.modules.fastqc.fastqc [INFO ] Found 25 reports [2024-10-09 21:55:12,520] multiqc [DEBUG ] No samples found: pycoqc [2024-10-09 21:55:12,525] multiqc [DEBUG ] No samples found: minionqc [2024-10-09 21:55:12,530] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-10-09 21:55:12,535] multiqc [DEBUG ] No samples found: clusterflow [2024-10-09 21:55:12,540] multiqc [DEBUG ] No samples found: bcl2fastq [2024-10-09 21:55:12,545] multiqc [DEBUG ] No samples found: interop [2024-10-09 21:55:12,550] multiqc [DEBUG ] No samples found: ivar [2024-10-09 21:55:12,555] multiqc [DEBUG ] No samples found: flash [2024-10-09 21:55:12,559] multiqc [DEBUG ] No samples found: seqyclean [2024-10-09 21:55:12,559] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2024-10-09 21:55:12,559] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2024-10-09 21:55:12,559] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2024-10-09 21:55:12,559] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2024-10-09 21:55:12,559] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2024-10-09 21:55:12,559] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2024-10-09 21:55:12,560] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2024-10-09 21:55:12,560] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2024-10-09 21:55:12,560] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2024-10-09 21:55:12,560] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-10-09 21:55:12,560] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2024-10-09 21:55:12,560] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2024-10-09 21:55:12,560] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2024-10-09 21:55:12,560] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2024-10-09 21:55:12,560] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-10-09 21:55:12,560] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2024-10-09 21:55:12,560] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2024-10-09 21:55:12,560] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2024-10-09 21:55:12,560] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2024-10-09 21:55:12,560] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2024-10-09 21:55:12,560] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2024-10-09 21:55:12,560] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2024-10-09 21:55:12,560] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2024-10-09 21:55:12,560] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2024-10-09 21:55:12,560] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2024-10-09 21:55:12,560] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2024-10-09 21:55:12,560] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2024-10-09 21:55:12,560] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2024-10-09 21:55:12,560] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2024-10-09 21:55:12,560] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2024-10-09 21:55:12,590] multiqc [INFO ] Compressing plot data [2024-10-09 21:55:13,047] multiqc [INFO ] Report : multiqc_report.html [2024-10-09 21:55:13,047] multiqc [INFO ] Data : multiqc_data [2024-10-09 21:55:13,047] multiqc [DEBUG ] Moving data file from '/state/partition1/job-51981012/tmp9alv8sj3/multiqc_data' to '/scratch/gencore/GENEFLOW/work/nf/bf/f923640f4f346832545789df0cbbcc/merged/multiqc_data' [2024-10-09 21:55:13,180] multiqc [INFO ] MultiQC complete