HW3HFAFXX_n01_zt14ss29.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HW3HFAFXX_n01_zt14ss29.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	323279
Sequences flagged as poor quality	0
Sequence length	75
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

$Per base sequence content$

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	345	0.10671896411458832	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGGAT	45	1.00003585E-4	38.332905	45
TGCCGGG	55	3.2521042E-4	31.363287	12
CGTGCAT	45	0.004618082	30.666323	10
ATCGCAA	45	0.004618082	30.666323	41
TCCTCCG	50	0.0077272546	27.599691	18
AGAACGG	70	0.0013318618	24.64258	67
TCTATAC	75	0.0019882831	23.0033	3
GTATTAT	180	3.4015102E-10	23.003298	1
GTATAAT	105	2.271701E-5	23.003298	1
GTCCGCT	80	0.0028951627	21.562258	65
CGATCCT	80	0.0028951627	21.562258	34
ACAGGGC	105	6.01061E-4	19.714064	8
GATCTTT	430	0.0	19.2556	6
CCGATCC	90	0.005726064	19.166452	33
TAATACT	185	2.6244925E-7	18.651325	4
GTATAGG	130	1.17640026E-4	18.579588	1
TAAGACA	130	1.17640026E-4	18.579588	4
TCTGTCC	205	3.797868E-8	18.511988	8
ATTAGGC	95	0.007816122	18.160501	3
GTATAGT	95	0.007816122	18.160501	1