FastQCFastQC Report
Sat 23 Dec 2017
HW37FAFXX_n02_bc_c20.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHW37FAFXX_n02_bc_c20.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2017413
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGACC3350.034.611767145
TAGGTAG10750.020.2217315
GTATTAG16550.019.7053721
TCTATAC17700.019.6504963
CTAGGAC5351.3478711E-917.6073933
GGTAGTC9950.017.4780797
CTTAAGG9850.016.9198723
TATACGG12150.016.6988775
TAGTCAG9750.016.350229
GTGTACG6658.367351E-1116.3470631
GACAGTG11850.015.898667
GCTGCCC7302.0008883E-1115.883482145
GACCGCG3203.9712986E-415.8508867
CTATACT15350.015.5779784
ACTCCGC7452.7284841E-1115.5621368
ATACGGT13200.015.3705586
ACGGTGT9500.015.254998
AGGTAGT15900.015.0391176
TATAAGG18500.014.8842922
CCTAGGG2950.004221561414.7382362
Produced by FastQC (version 0.11.2)