FastQCFastQC Report
Sat 23 Dec 2017
HW37FAFXX_n01_bc_c18.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHW37FAFXX_n01_bc_c18.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2402912
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACTATGC16500.021.5292288
TACACCG7950.020.0623075
CTATGCA15000.019.815689
TAATACT36900.018.6647684
CACGAGC12550.017.909336145
CTATACT21100.017.8667774
TATACAG27350.017.4949195
CTAATAC23500.016.967593
TACTATG21600.016.4459367
CCGTGCG2650.002059581516.4142749
CTAGACT8850.016.3837034
CCTTGCG9300.016.370159
GTATAGA18750.016.240881
GTATTAG19000.016.0271841
GGACAGT11800.015.9737786
CCTAATA24850.015.7543962
GTATATA48400.015.5793561
ATACAGT23800.015.5349396
CCCTATA12250.015.3876272
CCTATAC15150.015.3130863
Produced by FastQC (version 0.11.2)