HW32WAFXX_n01_zt2ss40.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HW32WAFXX_n01_zt2ss40.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1349337
Sequences flagged as poor quality	0
Sequence length	75
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTACGCTGCATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGG	4590	0.3401670598227129	Illumina PCR Primer Index 11 (96% over 29bp)
GTTATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACACACGAATTAAAAGTGAAACCGCAAAAGGCT	2499	0.18520206590347704	No Hit
GTATAGTACTAACCACAATTGTAAGTTGTACTACCCGTATGAAGCACAAGTTCAACTACGAACGTTTTAACCGCA	2425	0.17971789108280586	No Hit
ATACACATCTCCGAGCCCACGAGACTACGCTGCATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGGGGG	2076	0.15385333686099173	Illumina PCR Primer Index 11 (96% over 29bp)
GTACAAGACCATACGATCTGCATGTTATCTAGAGTTCAACCAATATAACGATCTTGCGATCGCTTGGTTTTAGCC	2050	0.15192646462670187	No Hit
ATCTAGGACTACCATGGTTGCAACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGC	1844	0.13665970769348204	No Hit
GTCCTAGATACTACCATCAAAAGTTGATAGGGCAGACATTTGAAAGATCTGTCGTCGGTACAAGACCATACGATC	1735	0.1285816664035745	No Hit
TCGTAATACTAATGCCCCCAAACTGCTTCTATTAATCATTACCTCTTGATCTGAAAACCAATGAAAGCAGAACAG	1724	0.12776645122752878	No Hit
GTACTATTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTCAAATGCCTGAATATTCTGTGCATGGGATAATG	1718	0.1273217884042311	No Hit
GTCTTACGACGGTCCAAGAATTTCACCTCTCGCGTCGTAATACTAATGCCCCCAAACTGCTTCTATTAATCATTA	1697	0.1257654685226893	No Hit
CCTTAGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTGCAACCA	1367	0.10130901324131777	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCATGA	565	29.919165	55
TCTTGAA	880	29.794273	53
CGTATTC	1205	29.204325	38
TCCGTCT	1065	28.50591	43
GTATTCC	1355	28.262966	39
ATTCCGT	1010	28.010864	41
TTGCCGT	1635	27.430101	44
GGGGGGG	17555	27.34266	69
TCGTATT	1225	27.319305	37
GCCGTCT	5370	27.174896	46
TTCTGCA	750	27.138924	52
TGCCGTC	5735	27.009388	45
TATTCCG	1255	26.941166	40
CTTGAAA	5970	25.252764	54
GGTTGCC	835	25.20259	42
TCGCGTA	2140	25.150396	35
ATATAAG	735	24.880249	2
CCGTCTT	6260	24.744225	47
CGCGTAT	2125	24.678497	36
TTCCGTC	1265	24.54448	42