HW32WAFXX_n01_zt2ss30.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HW32WAFXX_n01_zt2ss30.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1610575
Sequences flagged as poor quality	0
Sequence length	75
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTTATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACACACGAATTAAAAGTGAAACCGCAAAAGGCT	2599	0.16137093895037488	No Hit
GTATAGTACTAACCACAATTGTAAGTTGTACTACCCGTATGAAGCACAAGTTCAACTACGAACGTTTTAACCGCA	2481	0.15404436303804542	No Hit
CTTATACACATCTCCGAGCCCACGAGACCGGAGCCTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGG	2128	0.13212672492743274	Illumina PCR Primer Index 10 (96% over 29bp)
GTACAAGACCATACGATCTGCATGTTATCTAGAGTTCAACCAATATAACGATCTTGCGATCGCTTGGTTTTAGCC	1932	0.1199571581578008	No Hit
GTCCTAGATACTACCATCAAAAGTTGATAGGGCAGACATTTGAAAGATCTGTCGTCGGTACAAGACCATACGATC	1633	0.10139235987147448	No Hit
ATCTAGGACTACCATGGTTGCAACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGC	1615	0.10027474659671236	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	765	25.704983	43
GTATGCC	760	25.420158	42
CCGTCTT	765	25.254017	47
GCCGTCT	780	24.768362	46
ATGCCGT	785	24.171127	44
TATCTCG	815	24.127987	36
TGCCGTC	825	23.835527	45
ACGGGTG	675	23.006336	69
CGTATGC	860	22.865477	41
GCTTGAA	875	22.079226	56
ACCGGTA	705	21.531158	15
CTCGTAT	885	21.439926	39
TGCTTGA	860	21.260883	55
GTGTAGG	345	21.00709	1
CTTGAAA	1025	20.194414	57
CGTCTTC	965	20.020023	48
GGTCCAA	590	19.880657	11
GACGGTC	650	19.637774	8
GACGGGT	810	19.597988	68
CTTCTGC	1165	19.544378	51