FastQCFastQC Report
Tue 5 Nov 2019
HW2VHAFXY_n01_14hCut_9h14h_Oct25.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHW2VHAFXY_n01_14hCut_9h14h_Oct25.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences183739610
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCAATAG756700.016.5631963
ATAGGAA433350.016.526526
TACACCC426400.016.4226261
AACGGGA334500.016.219181
GTGCTGG423450.016.201721
AAGGAAT537900.015.6826741
GACTGTC680550.015.6696534
TACCGAA388800.015.6695861
GTCGCAG649550.015.6433328
TTACAGG685250.015.6401991
AGAAAAG326050.015.6210053
AGTGCCG387700.015.5834481
GACCGTG367350.015.547831
ACCGAGA188650.015.5375824
GATGATC352200.015.5322071
CTGCCTA456250.015.5267061
CACTAAG409750.015.5050611
CCCTAAC548350.015.462091
CCCGAAG353750.015.4579281
CGGGACA314500.015.4564983
Produced by FastQC (version 0.11.5)