[2019-10-31 12:10:32,442] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/20170330/intel/lib/python2.7/site-packages/multiqc-1.0.dev0-py2.7.egg/multiqc_config.yaml
[2019-10-31 12:10:32,442] multiqc [DEBUG ] No MultiQC config found: /home/mk5636/.multiqc_config.yaml
[2019-10-31 12:10:32,443] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml
[2019-10-31 12:10:32,455] multiqc [DEBUG ] Loading config settings from: /home/mk5636/SCRIPTS/hpcpipe/mqc_config.yaml
[2019-10-31 12:10:32,455] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}}
[2019-10-31 12:10:32,455] multiqc [DEBUG ] Command used: /share/apps/multiqc/20170330/intel/bin/multiqc -f -c /home/mk5636/SCRIPTS/hpcpipe/mqc_config.yaml /beegfs/mk5636/logs/html/HW2TNAFXY/merged
[2019-10-31 12:10:32,455] multiqc [DEBUG ] Could not connect to multiqc.info for version check
[2019-10-31 12:10:32,455] multiqc [INFO ] This is MultiQC v1.0.dev0
[2019-10-31 12:10:32,455] multiqc [DEBUG ] Command : /share/apps/multiqc/20170330/intel/bin/multiqc -f -c /home/mk5636/SCRIPTS/hpcpipe/mqc_config.yaml /beegfs/mk5636/logs/html/HW2TNAFXY/merged
[2019-10-31 12:10:32,455] multiqc [DEBUG ] Working dir : /beegfs/mk5636/logs/html/HW2TNAFXY/merged
[2019-10-31 12:10:32,455] multiqc [INFO ] Template : default
[2019-10-31 12:10:32,455] multiqc [DEBUG ] Running in --force mode, will overwrite any existing reports.
[2019-10-31 12:10:32,455] multiqc [INFO ] Searching '/beegfs/mk5636/logs/html/HW2TNAFXY/merged'
[2019-10-31 12:10:32,456] multiqc [DEBUG ] Analysing modules: rna_seqc, custom_content, peddy, methylQA, qualimap, preseq, quast, rseqc, busco, goleft_indexcov, snpeff, gatk, htseq, bcftools, featureCounts, picard, prokka, samblaster, samtools, bamtools, bismark, hicup, salmon, kallisto, slamdunk, star, tophat, bowtie2, bowtie1, cutadapt, trimmomatic, skewer, fastq_screen, fastqc, clusterflow
[2019-10-31 12:10:32,456] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-5398550/tmpbNOgKw
[2019-10-31 12:10:32,874] multiqc.modules.rna_seqc.rna_seqc [DEBUG ] Could not find any RNA-SeQC data in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:32,910] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 17 samples (table)
[2019-10-31 12:10:32,922] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table)
[2019-10-31 12:10:32,924] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table)
[2019-10-31 12:10:32,946] multiqc.modules.peddy.peddy [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:32,957] multiqc.modules.methylQA.methylQA [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:32,965] multiqc.modules.qualimap.QM_BamQC [DEBUG ] Using default Qualimap thresholds: 1, 5, 10, 30, 50
[2019-10-31 12:10:32,990] multiqc.modules.qualimap.qualimap [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:33,534] multiqc.modules.preseq.preseq [DEBUG ] Could not find any preseq data in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:33,545] multiqc.modules.quast.quast [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:34,333] multiqc.modules.rseqc.rseqc [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:34,343] multiqc.modules.busco.busco [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:34,357] multiqc.modules.goleft_indexcov.goleft_indexcov [DEBUG ] Did not find goleft indexcov outputs in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:34,550] multiqc.modules.snpeff.snpeff [DEBUG ] Could not find any data in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:34,782] multiqc.modules.gatk.gatk [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:34,974] multiqc.modules.htseq.htseq [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:35,165] multiqc.modules.bcftools.bcftools [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:35,175] multiqc.modules.featureCounts.feature_counts [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:37,108] multiqc.modules.picard.picard [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:37,122] multiqc.modules.prokka.prokka [DEBUG ] Could not find any Prokka data in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:37,311] multiqc.modules.samblaster.samblaster [DEBUG ] Could not find any data in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:37,884] multiqc.modules.samtools.samtools [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:38,075] multiqc.modules.bamtools.bamtools [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:38,102] multiqc.modules.bismark.bismark [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:38,112] multiqc.modules.hicup.hicup [DEBUG ] Could not find any HiCUP data in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:38,127] multiqc.modules.salmon.salmon [DEBUG ] Could not find any Salmon data in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:38,316] multiqc.modules.kallisto.kallisto [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:39,446] multiqc.modules.slamdunk.slamdunk [DEBUG ] No slamdunk reports found.
[2019-10-31 12:10:39,461] multiqc.modules.star.star [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:39,472] multiqc.modules.tophat.tophat [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:39,662] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:39,858] multiqc.modules.bowtie1.bowtie1 [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:40,049] multiqc.modules.cutadapt.cutadapt [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:40,242] multiqc.modules.trimmomatic.trimmomatic [DEBUG ] Could not find any Trimmomatic data in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:40,430] multiqc.modules.skewer.skewer [DEBUG ] Could not find any data in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:40,441] multiqc.modules.fastq_screen.fastq_screen [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:45,425] multiqc.modules.fastqc.fastqc [INFO ] Found 34 reports
[2019-10-31 12:10:49,002] multiqc.modules.clusterflow.clusterflow [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HW2TNAFXY/merged',)
[2019-10-31 12:10:49,052] multiqc [INFO ] Report : multiqc_report.html
[2019-10-31 12:10:49,055] multiqc [INFO ] Data : multiqc_data
[2019-10-31 12:10:49,055] multiqc [DEBUG ] Moving data file from '/state/partition1/job-5398550/tmpbNOgKw/multiqc_data/multiqc_fastqc.txt' to '/beegfs/mk5636/logs/html/HW2TNAFXY/merged/multiqc_data'
[2019-10-31 12:10:49,057] multiqc [DEBUG ] Moving data file from '/state/partition1/job-5398550/tmpbNOgKw/multiqc_data/multiqc_sources.txt' to '/beegfs/mk5636/logs/html/HW2TNAFXY/merged/multiqc_data'
[2019-10-31 12:10:49,062] multiqc [DEBUG ] Moving data file from '/state/partition1/job-5398550/tmpbNOgKw/multiqc_data/multiqc_general_stats.txt' to '/beegfs/mk5636/logs/html/HW2TNAFXY/merged/multiqc_data'
[2019-10-31 12:10:49,191] multiqc [INFO ] MultiQC complete