HW2NGBGX5_n01_zmtarget0523-183s2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HW2NGBGX5_n01_zmtarget0523-183s2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9722353
Sequences flagged as poor quality	0
Sequence length	76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	121921	1.2540277029644984	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCATGGCATCTCGTATGC	47610	0.48969627002845917	TruSeq Adapter, Index 12 (97% over 37bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	22268	0.22903920480978218	No Hit
TTTTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGA	13034	0.13406219667193733	No Hit
TTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGT	12655	0.13016396339445813	No Hit
TTGTACTCTAGTTGTTACCTCTAATGCTGGACACCTGATAGTCCTACAGA	12295	0.12646115605964933	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	7100	56.688786	44
TATGCCG	7290	55.73941	46
TCGTATG	6915	55.573795	43
CTCGTAT	6830	54.933086	42
GTATGCC	7965	52.026382	45
ACGTCTG	10375	48.34201	15
AGTCACC	10395	48.049946	28
CAGTCAC	10475	47.61639	27
CACGTCT	10675	47.27829	14
TCTCGTA	8010	46.27278	41
GTCTGAA	11480	43.90161	17
ATGCCGT	9075	42.731762	47
ACACGTC	11935	42.521633	13
CCAGTCA	11825	42.44667	26
CACACGT	11940	42.328384	12
CGTCTGA	11970	42.016754	16
CCGTCTT	8680	41.974373	50
AAAAGGG	9785	41.670788	70
TCGGAAG	12440	40.87946	3
GCCGTCT	8900	40.34714	49