HW2NGBGX5_n01_zmtarget0521-183s.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HW2NGBGX5_n01_zmtarget0521-183s.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	26364696
Sequences flagged as poor quality	0
Sequence length	76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGC	150841	0.5721325214597581	TruSeq Adapter, Index 7 (100% over 50bp)
CGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACGTCATCAAGG	51513	0.19538628474987915	No Hit
GGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGAC	42305	0.1604607919620996	No Hit
GCTGACTCTAGCAGATCTATCGATTCTAGCATGACTGGTGGACAGCAAAT	37600	0.14261495751743164	No Hit
TTTTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGA	36373	0.1379610066431261	No Hit
GTCGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAG	27755	0.10527335494405093	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	19930	57.68938	44
TCGTATG	20005	57.227615	43
TATGCCG	20050	57.117172	46
CTCGTAT	19610	56.488255	42
GTATGCC	21855	52.60807	45
TCTCGTA	22265	49.09207	41
AGTCACC	24735	47.601807	28
AAAAGGG	23060	45.957817	70
CAGTCAC	25890	45.545795	27
ACGTCTG	26555	45.524273	15
CACGTCT	27690	43.67081	14
CGTCTGA	27720	43.521957	16
CCGTCTT	26385	43.19102	50
GTCTGAA	28105	43.162296	17
ATGCCGT	27005	42.549583	47
TGAAAAA	27675	42.506493	62
GCTTGAA	27030	42.407207	59
GCCGTCT	27755	41.122295	49
CACACGT	29475	41.10947	12
CCAGTCA	28890	41.106987	26