FastQCFastQC Report
Thu 12 Nov 2020
HW2MCDRXX_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHW2MCDRXX_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences936168142
Sequences flagged as poor quality0
Sequence length8
%GC68

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTACGCT38130138140.73001033611332No Hit
CGAGGCTG23440557825.038833034760543No Hit
CGGAGCCT16607241117.73959223235349No Hit
CAGAGAGG11723189312.522525360620529No Hit
GGGGGGGG160690221.7164675103844753No Hit
CCAACCAT24840550.2653428255626328No Hit
CCTACCCT14115490.15077943124452103No Hit
GCTAGCTT9998380.10680111351193576No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)